Jatropha Genome Database

JcCB0297551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0297551.10 - phase: 0 /partial
         (52 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60420.1 | Symbols:  | DC1 domain-containing protein | chr1:2...    47   2e-06

>AT1G60420.1 | Symbols:  | DC1 domain-containing protein |
          chr1:22261978-22264243 FORWARD
          Length = 578

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 26/29 (89%)

Query: 24 FVIRSNGDQIRISSLVGKIVGLYFSGSWC 52
          F++R++G+Q+++ SL+GK +GLYFS +WC
Sbjct: 27 FLVRNDGEQVKVDSLLGKKIGLYFSAAWC 55