Jatropha Genome Database

JcCB0294291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0294291.10 - phase: 0 /partial
         (171 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12410.1 | Symbols:  | THUMP domain-containing protein | chr5...    75   1e-14

>AT5G12410.1 | Symbols:  | THUMP domain-containing protein |
           chr5:4021974-4023950 REVERSE
          Length = 376

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 82/175 (46%), Gaps = 11/175 (6%)

Query: 1   FYEELVHGKDTSVDLAELPNKPLNKKIKFVYSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           F+EEL+ G D+ V+     N P+NKK+ F YS                            
Sbjct: 59  FFEELIQGTDSKVNPGLFGN-PINKKVTFSYSEDEDEEEDESNNGEEEENKGDGDKAVVS 117

Query: 61  XXKSDVNQNSDAKSEVPTNEKLSFPNV--ENTCGANQ--REEKTKDSEDSGNDLENPTSE 116
              +D+    +  SE   N++++   +  E +C   Q    E  K+ ED GN      + 
Sbjct: 118 EGGNDLVNEKEIASE-GVNDQVNEKEIASEGSCEVKQLAENETVKEEEDKGNQ----KNG 172

Query: 117 AKEPPAKKQCLDTCVSKSTIHEKMEEKSVDKLIEDELKELGDKSKRRFANLDSGC 171
             EPP KK C +     + ++E  E KS+DKLIE ELKELGDKSKRRF  LD GC
Sbjct: 173 GDEPPRKKTCTEEANPLAKVNENAE-KSIDKLIEAELKELGDKSKRRFMKLDPGC 226