Jatropha Genome Database

JcCB0294151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0294151.10 + phase: 0 /partial
         (230 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16910.1 | Symbols: AMS | AMS (ABORTED MICROSPORES); DNA bind...   199   1e-51
AT1G10610.1 | Symbols:  | DNA binding / transcription factor | c...   103   7e-23

>AT2G16910.1 | Symbols: AMS | AMS (ABORTED MICROSPORES); DNA binding
           / transcription factor | chr2:7331721-7334077 FORWARD
          Length = 571

 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 118/164 (71%), Gaps = 5/164 (3%)

Query: 4   FQSLIERLRPLVGLKGWDYCVLWIFSDDQRFLEWMECCCGGTEDIKNGGDEVQFPLSSSC 63
            Q+L+E+LRPLVG + WDYCVLW  ++DQRF++WM CCCGGTE I   G E     S   
Sbjct: 5   MQNLLEKLRPLVGARAWDYCVLWRLNEDQRFVKWMGCCCGGTELIAENGTE---EFSYGG 61

Query: 64  CRDLIFQHQRTKSCELLAQLPTSIPLDSGIHAQTLISNQPRWLNFSSCSDSSVLEGTVGT 123
           CRD++F H RTKSCE L+ LP SIPLDSGI+A+TL++NQ  WL  S  S+ S ++ T+ T
Sbjct: 62  CRDVMFHHPRTKSCEFLSHLPASIPLDSGIYAETLLTNQTGWL--SESSEPSFMQETICT 119

Query: 124 RALIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIREQEAIIN 167
           R LIP+PGGL+ELF T+ V+EDQ ++DFV   C+++ +    IN
Sbjct: 120 RVLIPIPGGLVELFATRHVAEDQNVVDFVMGHCNMLMDDSVTIN 163


>AT1G10610.1 | Symbols:  | DNA binding / transcription factor |
           chr1:3506463-3508752 FORWARD
          Length = 441

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 17/167 (10%)

Query: 5   QSLIERLRPLVGLKGWDYCVLWIFSDD-QRFLEWMECCCGG--------TEDIKNGGDEV 55
           + + E LRP V  + WD CV+W   DD  RF+EW+ CCC G         E+ + GG   
Sbjct: 8   ERVKEFLRPFVDSRTWDLCVIWKLGDDPSRFIEWVGCCCSGCYIDKNIKLENSEEGGTGR 67

Query: 56  QFPLSSSCCRDLIFQHQ-RTKSCELLAQLPTSIPLDSGIHAQTLISNQPRWLNFSSCSDS 114
           +    +S CRD   +H+ RT +CE L++ P  +PL  GIH + ++S  P+WL     +  
Sbjct: 68  K--KKASFCRDDHNKHRIRTLACEALSRFPLFMPLYPGIHGEVVMSKSPKWL----VNSG 121

Query: 115 SVLEGTVGTRALIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIRE 161
           S +E    TR L+PV  GL+ELF       D+ ++  + S+C+   E
Sbjct: 122 SKME-MFSTRVLVPVSDGLVELFAFDMRPFDESMVHLIMSRCTTFFE 167