Jatropha Genome Database
- JcCB0293691.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0293691.20 - phase: 1 /partial
(337 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80570.1 | Symbols: | F-box family protein (FBL14) | chr1:30... 498 e-141
AT1G80570.3 | Symbols: | F-box family protein (FBL14) | chr1:30... 498 e-141
AT1G80570.2 | Symbols: | F-box family protein (FBL14) | chr1:30... 497 e-141
AT4G15475.1 | Symbols: | F-box family protein (FBL4) | chr4:884... 67 2e-11
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 65 6e-11
AT2G25490.1 | Symbols: EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX PRO... 54 2e-07
AT5G23340.1 | Symbols: | INVOLVED IN: biological_process unknow... 49 5e-06
>AT1G80570.1 | Symbols: | F-box family protein (FBL14) |
chr1:30290828-30292231 FORWARD
Length = 467
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/337 (71%), Positives = 273/337 (81%)
Query: 1 FTPRITGCGILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEG 60
F PRITGCG+LS+ VGCK L LHL RCLNV SVEWLEY GKLETLE+L IKNCR IGEG
Sbjct: 131 FAPRITGCGVLSLAVGCKKLRRLHLIRCLNVASVEWLEYFGKLETLEELCIKNCRAIGEG 190
Query: 61 DLIKLGYSWRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCIISPG 120
DLIKL SWRK+ LQFEVDANYRYMKVYD+L V+RW KQLVPC+S++ELSL NCII+PG
Sbjct: 191 DLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVERWPKQLVPCDSLVELSLGNCIIAPG 250
Query: 121 RGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXX 180
RGLACVL CKNLEK+HLDMC GV D DII L QK+ +LRSISLRVPSDF+
Sbjct: 251 RGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSDFTLPLLNNITL 310
Query: 181 XXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSF 240
TD+SL A+AQ+C LES ++SFSDGEFPS SFTL GI+ LIQ CP+RELSLDHV F
Sbjct: 311 RLTDESLSAIAQHCSKLESFKISFSDGEFPSLFSFTLQGIITLIQKCPVRELSLDHVCVF 370
Query: 241 NDTGMEALCMAQFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGMTDDGLMPLIG 300
ND GMEALC AQ LE LELV CQE+SDEGL L + FP L +L+L KCLG+TDDG+ PL+G
Sbjct: 371 NDMGMEALCSAQKLEILELVHCQEVSDEGLILVSQFPSLNVLKLSKCLGVTDDGMRPLVG 430
Query: 301 SYKLETLTVEDCPQISERGVQGAARTVSFRQDLSWMY 337
S+KLE L VEDCPQ+S RGV GAA +VSF+QDLSWMY
Sbjct: 431 SHKLELLVVEDCPQVSRRGVHGAATSVSFKQDLSWMY 467
>AT1G80570.3 | Symbols: | F-box family protein (FBL14) |
chr1:30290828-30292231 FORWARD
Length = 467
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/337 (71%), Positives = 273/337 (81%)
Query: 1 FTPRITGCGILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEG 60
F PRITGCG+LS+ VGCK L LHL RCLNV SVEWLEY GKLETLE+L IKNCR IGEG
Sbjct: 131 FAPRITGCGVLSLAVGCKKLRRLHLIRCLNVASVEWLEYFGKLETLEELCIKNCRAIGEG 190
Query: 61 DLIKLGYSWRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCIISPG 120
DLIKL SWRK+ LQFEVDANYRYMKVYD+L V+RW KQLVPC+S++ELSL NCII+PG
Sbjct: 191 DLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVERWPKQLVPCDSLVELSLGNCIIAPG 250
Query: 121 RGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXX 180
RGLACVL CKNLEK+HLDMC GV D DII L QK+ +LRSISLRVPSDF+
Sbjct: 251 RGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSDFTLPLLNNITL 310
Query: 181 XXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSF 240
TD+SL A+AQ+C LES ++SFSDGEFPS SFTL GI+ LIQ CP+RELSLDHV F
Sbjct: 311 RLTDESLSAIAQHCSKLESFKISFSDGEFPSLFSFTLQGIITLIQKCPVRELSLDHVCVF 370
Query: 241 NDTGMEALCMAQFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGMTDDGLMPLIG 300
ND GMEALC AQ LE LELV CQE+SDEGL L + FP L +L+L KCLG+TDDG+ PL+G
Sbjct: 371 NDMGMEALCSAQKLEILELVHCQEVSDEGLILVSQFPSLNVLKLSKCLGVTDDGMRPLVG 430
Query: 301 SYKLETLTVEDCPQISERGVQGAARTVSFRQDLSWMY 337
S+KLE L VEDCPQ+S RGV GAA +VSF+QDLSWMY
Sbjct: 431 SHKLELLVVEDCPQVSRRGVHGAATSVSFKQDLSWMY 467
>AT1G80570.2 | Symbols: | F-box family protein (FBL14) |
chr1:30290661-30292231 FORWARD
Length = 480
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/337 (71%), Positives = 273/337 (81%)
Query: 1 FTPRITGCGILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEG 60
F PRITGCG+LS+ VGCK L LHL RCLNV SVEWLEY GKLETLE+L IKNCR IGEG
Sbjct: 144 FAPRITGCGVLSLAVGCKKLRRLHLIRCLNVASVEWLEYFGKLETLEELCIKNCRAIGEG 203
Query: 61 DLIKLGYSWRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCIISPG 120
DLIKL SWRK+ LQFEVDANYRYMKVYD+L V+RW KQLVPC+S++ELSL NCII+PG
Sbjct: 204 DLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVERWPKQLVPCDSLVELSLGNCIIAPG 263
Query: 121 RGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXX 180
RGLACVL CKNLEK+HLDMC GV D DII L QK+ +LRSISLRVPSDF+
Sbjct: 264 RGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSDFTLPLLNNITL 323
Query: 181 XXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSF 240
TD+SL A+AQ+C LES ++SFSDGEFPS SFTL GI+ LIQ CP+RELSLDHV F
Sbjct: 324 RLTDESLSAIAQHCSKLESFKISFSDGEFPSLFSFTLQGIITLIQKCPVRELSLDHVCVF 383
Query: 241 NDTGMEALCMAQFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGMTDDGLMPLIG 300
ND GMEALC AQ LE LELV CQE+SDEGL L + FP L +L+L KCLG+TDDG+ PL+G
Sbjct: 384 NDMGMEALCSAQKLEILELVHCQEVSDEGLILVSQFPSLNVLKLSKCLGVTDDGMRPLVG 443
Query: 301 SYKLETLTVEDCPQISERGVQGAARTVSFRQDLSWMY 337
S+KLE L VEDCPQ+S RGV GAA +VSF+QDLSWMY
Sbjct: 444 SHKLELLVVEDCPQVSRRGVHGAATSVSFKQDLSWMY 480
>AT4G15475.1 | Symbols: | F-box family protein (FBL4) |
chr4:8845927-8848701 FORWARD
Length = 610
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 143/332 (43%), Gaps = 40/332 (12%)
Query: 9 GILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYS 68
G+++V GC L L L +C++VT V + +LE L++ + + + + +G
Sbjct: 260 GLIAVAQGCHRLKNLKL-QCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKG 318
Query: 69 WRKVKKLQFE---------VDANYRYMKVYDRLAVDRWQKQLV--------PCESMLELS 111
+K+K L ++A K +R+ ++ C + EL+
Sbjct: 319 SKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELA 378
Query: 112 LVNCIISPGRGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFS 171
L+ C L + CK+LE +HL C G+ D + +A+ RNL+ + +R +
Sbjct: 379 LLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIG 438
Query: 172 XXXXXXXXXXXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMCPIRE 231
+ + ++ ++CK L + L F D ++A+ + C +++
Sbjct: 439 ------------NKGIISIGKHCKSLTELSLRFCD-------KVGNKALIAIGKGCSLQQ 479
Query: 232 LSLDHVYSFNDTGMEALCMA-QFLETLELVRCQEISDEGL-QLAAHFPRLCILRLRKCLG 289
L++ +D G+ A+ L L++ Q I D L +L P L L L C
Sbjct: 480 LNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHH 539
Query: 290 MTDDGLMPLIGSYK-LETLTVEDCPQISERGV 320
+TD+GL L+ K LET + CP I+ GV
Sbjct: 540 ITDNGLNHLVQKCKLLETCHMVYCPGITSAGV 571
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 104 CESMLELSLVNCIISPGRGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQK-SRNLRSI 162
C S+ L L C + +GLA V CK LE+++L C G+ D +I L S++L+SI
Sbjct: 165 CTSLKSLDLQGCYVGD-QGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSI 223
Query: 163 SLRVPSDFSXXXXXXXXXXXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILA 222
+ + TD SL+AV +CK+LE + L D E+ G++A
Sbjct: 224 GVAASAKI------------TDLSLEAVGSHCKLLEVLYL---DSEY-----IHDKGLIA 263
Query: 223 LIQMCP-IRELSLDHVYSFNDTGMEA---LCMAQFLETLELVRCQEISDEGLQ-LAAHFP 277
+ Q C ++ L L V S D A LC + LE L L Q +D+G++ +
Sbjct: 264 VAQGCHRLKNLKLQCV-SVTDVAFAAVGELCTS--LERLALYSFQHFTDKGMRAIGKGSK 320
Query: 278 RLCILRLRKCLGMTDDGLMPLI-GSYKLETLTVEDCPQISERGVQGAARTVSFRQDLSWM 336
+L L L C ++ GL + G +LE + + C I RG++ ++ ++L+ +
Sbjct: 321 KLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALL 380
Query: 337 Y 337
Y
Sbjct: 381 Y 381
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 136/321 (42%), Gaps = 36/321 (11%)
Query: 2 TPRITGCGILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGD 61
+ +T G+ ++ G + L L C NV+SV K +L+ L ++ C V G+
Sbjct: 124 SSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYV-GDQG 182
Query: 62 LIKLGYSWRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQLVPC-ESMLELSLVNCIISPG 120
L +G +++++L + V D +V C +S+ + +
Sbjct: 183 LAAVGKFCKQLEELNLRFCEGLTDVGVID---------LVVGCSKSLKSIGVAASAKITD 233
Query: 121 RGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXX 180
L V CK LE ++LD + D +I +AQ L+++ L+ S
Sbjct: 234 LSLEAVGSHCKLLEVLYLDS-EYIHDKGLIAVAQGCHRLKNLKLQCVS------------ 280
Query: 181 XXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMC-PIRELSLDHVYS 239
TD + AV + C LE + L SF FT G+ A+ + +++L+L Y
Sbjct: 281 -VTDVAFAAVGELCTSLERLALY-------SFQHFTDKGMRAIGKGSKKLKDLTLSDCYF 332
Query: 240 FNDTGMEALCMA-QFLETLELVRCQEISDEGLQ-LAAHFPRLCILRLRKCLGMTDDGLMP 297
+ G+EA+ + LE +E+ C I G++ + PRL L L C + + L
Sbjct: 333 VSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQE 392
Query: 298 L-IGSYKLETLTVEDCPQISE 317
+ G LE L + DC I +
Sbjct: 393 IGKGCKSLEILHLVDCSGIGD 413
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 136/351 (38%), Gaps = 78/351 (22%)
Query: 1 FTPRITGCGILSVVVGC-KILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGE 59
F +T G++ +VVGC K L + + +T + LE +G L ++ + I +
Sbjct: 200 FCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLS-LEAVGSHCKLLEVLYLDSEYIHD 258
Query: 60 GDLIKLGYSWRKVKKLQF--------------------EVDANYRYMKVYDR--LAVDRW 97
LI + ++K L+ E A Y + D+ A+ +
Sbjct: 259 KGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKG 318
Query: 98 QKQLVPCESMLELSLVNCIISPGRGLACVLGKCKNLEKIHLDMC--VGVRDCDIIGLAQK 155
K+L +L+L +C +GL + CK LE++ ++ C +G R + IG +
Sbjct: 319 SKKLK------DLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIG--KS 370
Query: 156 SRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSF 215
L+ ++L + +L+ + + CK LE + L G
Sbjct: 371 CPRLKELALLYCQRIG------------NSALQEIGKGCKSLEILHLVDCSG-------- 410
Query: 216 TLNGILALIQMCPIRELSLDHVYSFNDTGMEALCMAQFLETLELVRCQEISDEGL-QLAA 274
+ I MC I + + L+ L + RC EI ++G+ +
Sbjct: 411 -----IGDIAMCSIAK------------------GCRNLKKLHIRRCYEIGNKGIISIGK 447
Query: 275 HFPRLCILRLRKCLGMTDDGLMPLIGSYKLETLTVEDCPQISERGVQGAAR 325
H L L LR C + + L+ + L+ L V C QIS+ G+ AR
Sbjct: 448 HCKSLTELSLRFCDKVGNKALIAIGKGCSLQQLNVSGCNQISDAGITAIAR 498
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE
Length = 642
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 135 KIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLKAVAQNC 194
+I L CV V D +I LA+ NL++++L TD ++ AVAQ+C
Sbjct: 329 EIGLSRCVDVTDIGMISLARNCLNLKTLNLACCG------------FVTDVAISAVAQSC 376
Query: 195 KMLESVRLS----FSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSFNDTGMEALCM 250
+ L +++L ++ S +++ ++EL L Y ND G+E +
Sbjct: 377 RNLGTLKLESCHLITEKGLQSLGCYSM----------LVQELDLTDCYGVNDRGLEYISK 426
Query: 251 AQFLETLELVRCQEISDEGL-QLAAHFPRLCILRLRKCLGMTDDGLMPLI-GSYKLETLT 308
L+ L+L C ISD+G+ + + +L L L +C G DDGL L G L L
Sbjct: 427 CSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLNRLI 486
Query: 309 VEDCPQISERGVQ 321
+ C ++++ GV+
Sbjct: 487 LSYCCELTDTGVE 499
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 34/257 (13%)
Query: 25 LNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYSWRKVKKLQFEVDANYR 84
L+RC++VT + + L+ L++ C + + + + S R + L+ E
Sbjct: 332 LSRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDVAISAVAQSCRNLGTLKLE------ 385
Query: 85 YMKVYDRLAVDRWQKQLVPCESML--ELSLVNCIISPGRGLACVLGKCKNLEKIHLDMCV 142
L ++ + L C SML EL L +C RGL + KC NL+++ L +C
Sbjct: 386 ----SCHLITEKGLQSL-GCYSMLVQELDLTDCYGVNDRGLE-YISKCSNLQRLKLGLCT 439
Query: 143 GVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLKAVAQNCKMLESVRL 202
+ D I + K L + L + F DD L A+++ CK L + L
Sbjct: 440 NISDKGIFHIGSKCSKLLELDLYRCAGFG------------DDGLAALSRGCKSLNRLIL 487
Query: 203 SFSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSFNDTGMEALCMA-QFLETLELVR 261
S+ T G+ + Q+ + L L + + G+ A+ + L L++
Sbjct: 488 SYC-------CELTDTGVEQIRQLELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKL 540
Query: 262 CQEISDEGLQLAAHFPR 278
C+ I D G A+F +
Sbjct: 541 CENIDDSGFWALAYFSK 557
>AT2G25490.1 | Symbols: EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX
PROTEIN 1); protein binding / ubiquitin-protein ligase |
chr2:10848018-10850275 REVERSE
Length = 628
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 37/245 (15%)
Query: 104 CESMLELSLVNCIISPGRGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSIS 163
C S+ LSL N GL + C LEK+ L+ C + D ++ +A+ NL ++
Sbjct: 176 CPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELT 235
Query: 164 LRVPSDFSXXXXXXXXXXXTDDSLKAVAQNCKMLESVRLS----FSDGEFPSFSSFTLNG 219
L S D+ L A+A++C L+SV + D S S T
Sbjct: 236 LEACSRIG------------DEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCS 283
Query: 220 ILAL-IQMCPIRELSLDHV----YSFNDTGMEALCMA--------------QFLETLELV 260
+ L +QM + ++SL V S D + L Q L +L +
Sbjct: 284 LAKLKLQMLNVTDVSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTIT 343
Query: 261 RCQEISDEGLQ-LAAHFPRLCILRLRKCLGMTDDGLMPLI-GSYKLETLTVEDCPQISER 318
CQ ++D GL+ + P + + K ++D+GL+ S LE+L +E+C ++++
Sbjct: 344 ACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQF 403
Query: 319 GVQGA 323
G G+
Sbjct: 404 GFFGS 408
>AT5G23340.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: F-box family
protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits
to 3545 proteins in 210 species: Archae - 0; Bacteria -
454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses
- 15; Other Eukaryotes - 1159 (source: NCBI BLink). |
chr5:7856314-7857983 FORWARD
Length = 405
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 27/215 (12%)
Query: 110 LSLVNCIISPGRGLACVLGKCKN-LEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPS 168
L+L NC GLA + G+C + L+ + + C + D + +A+ +LR++ L
Sbjct: 103 LNLHNCKGITDTGLASI-GRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHL---- 157
Query: 169 DFSXXXXXXXXXXXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMC- 227
TD+SLK++++ C+ LE++ L ++ T +G+ L++ C
Sbjct: 158 --------AGCRFITDESLKSLSERCRDLEALGL-------QGCTNITDSGLADLVKGCR 202
Query: 228 PIRELSLDHVYSFNDTGMEALCM--AQFLETLELVRCQEISDEGLQLAAHFPR-LCILRL 284
I+ L ++ + D G+ ++ A L+TL+L+ C ++ +E + A F + L L +
Sbjct: 203 KIKSLDINKCSNVGDAGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLII 262
Query: 285 RKCLGMTDDGLMPLIGSYK--LETLTVEDCPQISE 317
C ++D+ +M L S K L+ L ++ C IS+
Sbjct: 263 GGCRDISDESIMLLADSCKDSLKNLRMDWCLNISD 297