Jatropha Genome Database

JcCB0293431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293431.10 + phase: 1 /partial
         (353 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07690.1 | Symbols:  | NAD or NADH binding / binding / cataly...   634   0.0  
AT2G41540.3 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding / gl...   626   e-180
AT2G41540.2 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding / gl...   626   e-180
AT2G41540.1 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding / gl...   626   e-180
AT5G40610.1 | Symbols:  | glycerol-3-phosphate dehydrogenase (NA...    67   2e-11
AT2G40690.1 | Symbols: GLY1, SFD1 | GLY1; glycerol-3-phosphate d...    52   5e-07

>AT3G07690.1 | Symbols:  | NAD or NADH binding / binding /
           catalytic/ coenzyme binding / glycerol-3-phosphate
           dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase,
           acting on CH-OH group of donors / oxidoreductase, acting
           on the CH-OH group of donors, NAD or NADP as acceptor |
           chr3:2457232-2459378 FORWARD
          Length = 466

 Score =  634 bits (1634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/363 (83%), Positives = 329/363 (90%), Gaps = 10/363 (2%)

Query: 1   YLKYVEARLGDRTLYADEILKDGFCLNMIDTPLGPLKVVTNLQEAVWDADIVINGLPSTE 60
           YLKYVEARLGDR LYADEILKDGFCLNMI+TPL PLKVVTNLQEAVWDADIVINGLPSTE
Sbjct: 104 YLKYVEARLGDRVLYADEILKDGFCLNMIETPLCPLKVVTNLQEAVWDADIVINGLPSTE 163

Query: 61  TLEVFEEISRYWKERITVPVIISLAKGVEAELEPEPRVITPTQMINRATGIPMENILYLG 120
           T +VF EIS+YWKER+  PVIISLAKGVEAE EP PR++TPTQMI+RATGIP+ENILYLG
Sbjct: 164 TFQVFNEISKYWKERVNAPVIISLAKGVEAEFEPHPRIVTPTQMIHRATGIPLENILYLG 223

Query: 121 GPNIASEIYNKEYANARICGAEKWRKPLAMFLRQPHFIVWDNGDLVTHELMGGLKNVYAI 180
           GPNIASE+YNKEYANARICG+EKWRKPL  FLRQ HFIVWDN DL+THE+MGGLKNVYAI
Sbjct: 224 GPNIASEVYNKEYANARICGSEKWRKPLGKFLRQSHFIVWDNSDLITHEVMGGLKNVYAI 283

Query: 181 GA----------GMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTY 230
           GA          GMVA LT ESATSKSVYFAHCTSEMIFITHLLA+EPEKLAGPLLADTY
Sbjct: 284 GAVFVLAFLYSTGMVATLTKESATSKSVYFAHCTSEMIFITHLLAKEPEKLAGPLLADTY 343

Query: 231 VTLLKGRNAWYGQHLAKGDLNLDMGDSIKGKGMIQGVSAVKAFYELLSQSCLSVLHPEEN 290
           VTLLKGRNAWYGQ LAKG+L+L+MGDSIKGKGMIQGVSAVKAF+ELL+QS LS+ HPEE 
Sbjct: 344 VTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGMIQGVSAVKAFFELLNQSSLSLQHPEEG 403

Query: 291 KPVAPVEICPILKMLYRILITREFSAQAILQALRDETMNDPRDRIEIAQSHVFYRPSLLG 350
           KPV P E+CPILKMLYRILITREFS +AIL+ALRDETMNDPR+ IEIA SH+F++P LLG
Sbjct: 404 KPVTPAELCPILKMLYRILITREFSCEAILEALRDETMNDPRELIEIAHSHLFFQPWLLG 463

Query: 351 QEP 353
           Q+P
Sbjct: 464 QKP 466


>AT2G41540.3 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding /
           glycerol-3-phosphate dehydrogenase (NAD+) |
           chr2:17326801-17328654 FORWARD
          Length = 462

 Score =  626 bits (1615), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/351 (87%), Positives = 329/351 (93%)

Query: 1   YLKYVEARLGDRTLYADEILKDGFCLNMIDTPLGPLKVVTNLQEAVWDADIVINGLPSTE 60
           YLKYVEARLGDRTLYADEILKDGFCLNM+DTPL PLKVVTNLQEAVWDADIV+NGLPSTE
Sbjct: 111 YLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTE 170

Query: 61  TLEVFEEISRYWKERITVPVIISLAKGVEAELEPEPRVITPTQMINRATGIPMENILYLG 120
           T EVFEEIS+YWKERITVP+IISL+KG+E  LEP P +ITPT+MI++ATG+P++N+LYLG
Sbjct: 171 TREVFEEISKYWKERITVPIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLG 230

Query: 121 GPNIASEIYNKEYANARICGAEKWRKPLAMFLRQPHFIVWDNGDLVTHELMGGLKNVYAI 180
           GPNIA+EIYNKEYANARICGA KWRKPLA FLRQPHFIVWDN DLVTHE+MGGLKNVYAI
Sbjct: 231 GPNIAAEIYNKEYANARICGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAI 290

Query: 181 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 240
           GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW
Sbjct: 291 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 350

Query: 241 YGQHLAKGDLNLDMGDSIKGKGMIQGVSAVKAFYELLSQSCLSVLHPEENKPVAPVEICP 300
           YGQ LAKG++N DMGDSI GKGMIQGVSAV AFY+LLSQS LS+L  EE KPVAPVE CP
Sbjct: 351 YGQMLAKGEINRDMGDSISGKGMIQGVSAVGAFYQLLSQSSLSILPSEEKKPVAPVESCP 410

Query: 301 ILKMLYRILITREFSAQAILQALRDETMNDPRDRIEIAQSHVFYRPSLLGQ 351
           ILK LY+ILITRE S QAILQALRDET+NDPRDRIEIAQSH FYRPSLLGQ
Sbjct: 411 ILKTLYKILITREQSTQAILQALRDETLNDPRDRIEIAQSHAFYRPSLLGQ 461


>AT2G41540.2 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding /
           glycerol-3-phosphate dehydrogenase (NAD+) |
           chr2:17326801-17328654 FORWARD
          Length = 462

 Score =  626 bits (1615), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/351 (87%), Positives = 329/351 (93%)

Query: 1   YLKYVEARLGDRTLYADEILKDGFCLNMIDTPLGPLKVVTNLQEAVWDADIVINGLPSTE 60
           YLKYVEARLGDRTLYADEILKDGFCLNM+DTPL PLKVVTNLQEAVWDADIV+NGLPSTE
Sbjct: 111 YLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTE 170

Query: 61  TLEVFEEISRYWKERITVPVIISLAKGVEAELEPEPRVITPTQMINRATGIPMENILYLG 120
           T EVFEEIS+YWKERITVP+IISL+KG+E  LEP P +ITPT+MI++ATG+P++N+LYLG
Sbjct: 171 TREVFEEISKYWKERITVPIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLG 230

Query: 121 GPNIASEIYNKEYANARICGAEKWRKPLAMFLRQPHFIVWDNGDLVTHELMGGLKNVYAI 180
           GPNIA+EIYNKEYANARICGA KWRKPLA FLRQPHFIVWDN DLVTHE+MGGLKNVYAI
Sbjct: 231 GPNIAAEIYNKEYANARICGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAI 290

Query: 181 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 240
           GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW
Sbjct: 291 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 350

Query: 241 YGQHLAKGDLNLDMGDSIKGKGMIQGVSAVKAFYELLSQSCLSVLHPEENKPVAPVEICP 300
           YGQ LAKG++N DMGDSI GKGMIQGVSAV AFY+LLSQS LS+L  EE KPVAPVE CP
Sbjct: 351 YGQMLAKGEINRDMGDSISGKGMIQGVSAVGAFYQLLSQSSLSILPSEEKKPVAPVESCP 410

Query: 301 ILKMLYRILITREFSAQAILQALRDETMNDPRDRIEIAQSHVFYRPSLLGQ 351
           ILK LY+ILITRE S QAILQALRDET+NDPRDRIEIAQSH FYRPSLLGQ
Sbjct: 411 ILKTLYKILITREQSTQAILQALRDETLNDPRDRIEIAQSHAFYRPSLLGQ 461


>AT2G41540.1 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding /
           glycerol-3-phosphate dehydrogenase (NAD+) |
           chr2:17326801-17328654 FORWARD
          Length = 462

 Score =  626 bits (1615), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/351 (87%), Positives = 329/351 (93%)

Query: 1   YLKYVEARLGDRTLYADEILKDGFCLNMIDTPLGPLKVVTNLQEAVWDADIVINGLPSTE 60
           YLKYVEARLGDRTLYADEILKDGFCLNM+DTPL PLKVVTNLQEAVWDADIV+NGLPSTE
Sbjct: 111 YLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTE 170

Query: 61  TLEVFEEISRYWKERITVPVIISLAKGVEAELEPEPRVITPTQMINRATGIPMENILYLG 120
           T EVFEEIS+YWKERITVP+IISL+KG+E  LEP P +ITPT+MI++ATG+P++N+LYLG
Sbjct: 171 TREVFEEISKYWKERITVPIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLG 230

Query: 121 GPNIASEIYNKEYANARICGAEKWRKPLAMFLRQPHFIVWDNGDLVTHELMGGLKNVYAI 180
           GPNIA+EIYNKEYANARICGA KWRKPLA FLRQPHFIVWDN DLVTHE+MGGLKNVYAI
Sbjct: 231 GPNIAAEIYNKEYANARICGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAI 290

Query: 181 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 240
           GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW
Sbjct: 291 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 350

Query: 241 YGQHLAKGDLNLDMGDSIKGKGMIQGVSAVKAFYELLSQSCLSVLHPEENKPVAPVEICP 300
           YGQ LAKG++N DMGDSI GKGMIQGVSAV AFY+LLSQS LS+L  EE KPVAPVE CP
Sbjct: 351 YGQMLAKGEINRDMGDSISGKGMIQGVSAVGAFYQLLSQSSLSILPSEEKKPVAPVESCP 410

Query: 301 ILKMLYRILITREFSAQAILQALRDETMNDPRDRIEIAQSHVFYRPSLLGQ 351
           ILK LY+ILITRE S QAILQALRDET+NDPRDRIEIAQSH FYRPSLLGQ
Sbjct: 411 ILKTLYKILITREQSTQAILQALRDETLNDPRDRIEIAQSHAFYRPSLLGQ 461


>AT5G40610.1 | Symbols:  | glycerol-3-phosphate dehydrogenase (NAD+)
           / GPDH | chr5:16265071-16267258 REVERSE
          Length = 400

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 36/291 (12%)

Query: 41  NLQEAVWDADIVINGLPSTETLEVFEEISRYWKERITVPV-IISLAKGVEAELEPEPRVI 99
           +L+ AV DA++++   P     +  + I +    +IT  V  ISL KG+E + E  P +I
Sbjct: 130 DLENAVKDANMLVFVTPH----QFMDGICKKLDGKITGDVEAISLVKGMEVKKEG-PCMI 184

Query: 100 TPTQMINRATGIPMENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAMFLRQPHF 157
           +   +I++  GI   N   L G NIA+EI  ++++ A +   G+ +           P+F
Sbjct: 185 S--SLISKQLGI---NCCVLMGANIANEIAVEKFSEATVGYRGSREIADTWVQLFSTPYF 239

Query: 158 IVWDNGDLVTHELMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLL--- 214
           +V    D+   EL G LKNV AI AG V  L   + T K+        EM  ++ LL   
Sbjct: 240 MVTPVHDVEGVELCGTLKNVVAIAAGFVDGLEMGNNT-KAAIMRIGLREMKALSKLLFPS 298

Query: 215 AEEPEKLAGPLLADTYVTLLKGRNAWYGQHLAK--GDLNLD--MGDSIKGKGMIQGVSAV 270
            ++        +AD   T L GRN    +  AK  G  + D    + ++G+  +QGVS  
Sbjct: 299 VKDSTFFESCGVADVITTCLGGRNRRVAEAFAKSRGKRSFDELEAEMLQGQ-KLQGVSTA 357

Query: 271 KAFYELLSQSCLSVLHPEENKPVAPVEICPILKMLYRILITREFSAQAILQ 321
           +  YE+L             K    +E+ P+   +++I   R    +AI+Q
Sbjct: 358 REVYEVL-------------KHCGWLEMFPLFSTVHQICTGR-LQPEAIVQ 394


>AT2G40690.1 | Symbols: GLY1, SFD1 | GLY1; glycerol-3-phosphate
           dehydrogenase (NAD+) | chr2:16974107-16976241 FORWARD
          Length = 420

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 21/244 (8%)

Query: 40  TNLQEAVWDADIVINGLPSTETLEVFEEISRYWKERITVPVIISLAKGVEAELEPEPRVI 99
           T+ + A+ DAD  ++ +P   +    E I+ Y    +     ISL+KG+E         I
Sbjct: 151 TDAKAALLDADYCLHAVPVQFSSSFLEGIADYVDPGLP---FISLSKGLELNTLRMMSQI 207

Query: 100 TPTQMINRATGIPMENILYLGGPNIASEIYNKEYANARICGAE--KWRKPLAMFLRQPHF 157
            P  + N     P +  + L GP+ A E+ N     A +  ++  K    +   L   + 
Sbjct: 208 IPIALKN-----PRQPFVALSGPSFALELMN-NLPTAMVVASKDKKLANAVQQLLASSYL 261

Query: 158 IVWDNGDLVTHELMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEE 217
            +  + D+   E+ G LKNV AI AG+V  + N    S +   +   SE+ ++   +  +
Sbjct: 262 RINTSSDVTGVEIAGALKNVLAIAAGIVDGM-NLGNNSMAALVSQGCSEIRWLATKMGAK 320

Query: 218 PEKL-----AGPLLADTYVTLLKGRNAWYGQHLAKGDLNLDMGDSIKGKGMIQGVSAVKA 272
           P  +      G ++   +V L   RN   G  L  G+   D+  S+    + +GV+   A
Sbjct: 321 PTTITGLSGTGDIMLTCFVNL--SRNRTVGVRLGSGETLDDILTSM--NQVAEGVATAGA 376

Query: 273 FYEL 276
              L
Sbjct: 377 VIAL 380