Jatropha Genome Database

JcCB0293391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293391.10 - phase: 0 /partial
         (347 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS...    79   3e-15
AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS...    76   3e-14

>AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS
           HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein
           kinase/ protein binding | chr2:13329037-13331544 FORWARD
          Length = 571

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 68/96 (70%), Gaps = 3/96 (3%)

Query: 12  RKFSYGHLAQLKYLLHEAIQIDKILVHDKKTLCMKPEMEITLVFNEIEGHHE---QSDFI 68
           R+F Y HLAQ+K++L EAI+I ++L+HD+ T CMKP++ +TL  + +E + +   +S  I
Sbjct: 154 RRFCYSHLAQIKHILPEAIEIKRVLIHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKI 213

Query: 69  ALHQLFASRLTNYFTVHPEACDIPEAILPDPFNQSK 104
           AL ++F +RL ++   HP+  ++PE  LP+PFN+ K
Sbjct: 214 ALRKVFRARLADFVKAHPQGDEVPEEPLPEPFNRRK 249


>AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS
           HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1
           B); cyclin-dependent protein kinase |
           chr3:20251885-20254031 FORWARD
          Length = 486

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 7/114 (6%)

Query: 12  RKFSYGHLAQLKYLLHEAIQIDKILVHDKKTLCMKPEMEITLVFNEI--EGHHEQSDFIA 69
           R FSY HLAQ+K++  EAI++ ++L   + T CMKP + I L  + I  E     + ++ 
Sbjct: 89  RIFSYDHLAQMKHIYPEAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYME 148

Query: 70  LHQLFASRLTNYFTVHPEACDIPEAILPDPFNQSKRTAFGGEVSDIPEVKLPEP 123
           L ++F S+L ++   HP+  +IP+ +LP+PFN  +R ++ G VS    V L EP
Sbjct: 149 LRKVFHSKLVDFRKAHPKD-EIPKELLPEPFNSPQRDSYSGIVS----VGLGEP 197