Jatropha Genome Database
- JcCB0292291.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0292291.10 + phase: 1 /pseudo/partial
(439 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12400.1 | Symbols: | PHD finger transcription factor, putat... 364 e-101
AT5G22760.1 | Symbols: | PHD finger family protein | chr5:75716... 213 2e-55
AT5G35210.1 | Symbols: | peptidase M50 family protein / sterol-... 205 6e-53
AT5G35210.2 | Symbols: | peptidase M50 family protein / sterol-... 204 1e-52
AT1G05380.2 | Symbols: | DNA binding | chr1:1577231-1582190 FOR... 61 2e-09
AT1G05380.1 | Symbols: | DNA binding | chr1:1577231-1582190 FOR... 61 2e-09
AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP... 60 3e-09
AT5G58610.1 | Symbols: | PHD finger transcription factor, putat... 58 1e-08
AT3G14980.1 | Symbols: | PHD finger transcription factor, putat... 58 1e-08
AT5G36740.1 | Symbols: | PHD finger family protein | chr5:14460... 57 3e-08
AT5G36670.1 | Symbols: | PHD finger family protein | chr5:14401... 57 3e-08
AT5G63900.1 | Symbols: | PHD finger family protein | chr5:25568... 55 1e-07
AT2G37520.1 | Symbols: | PHD finger family protein | chr2:15745... 51 2e-06
AT2G36720.1 | Symbols: | PHD finger transcription factor, putat... 50 2e-06
AT3G53680.1 | Symbols: | PHD finger transcription factor, putat... 50 3e-06
AT4G14920.1 | Symbols: | DNA binding / protein binding / zinc i... 49 6e-06
>AT5G12400.1 | Symbols: | PHD finger transcription factor, putative
| chr5:4013813-4020909 FORWARD
Length = 1595
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/328 (53%), Positives = 224/328 (68%), Gaps = 11/328 (3%)
Query: 1 SPAVSALTEEKPMKSCHEW-----PREPVVLPPKAQLPPSSQNLDLSGISISDFFSVYAC 55
SP++S+LTEEK W LPPK QLPPSS LDL G+ + D F+ Y+C
Sbjct: 371 SPSISSLTEEKT------WIVDGKADNISALPPKPQLPPSSPILDLDGLPVLDVFTAYSC 424
Query: 56 LRXXXXXXXXXXXXXXXXVAALKCNSPSALFDCIHVSVLQTLRKHLECLSNEGSESASNC 115
LR V AL+C SPS LFD IHVSVLQ LRKHL+ L+ EG SAS C
Sbjct: 425 LRSFSTLLFLSPFELKDFVEALRCMSPSLLFDSIHVSVLQILRKHLKQLAAEGDLSASAC 484
Query: 116 LRSLDWDLLDLNTWPVFMVEYLLIHGSDLKPGFDLTLLKLLKSDYYKQSVSVKVEILRCL 175
LRSLDWD LD+ T+P+F+VEYLL GS PG DLT L ++DY++Q V++K+EIL L
Sbjct: 485 LRSLDWDTLDVVTYPLFVVEYLLCSGSKDNPGLDLTRLNFFRNDYFRQPVNLKIEILSRL 544
Query: 176 CDDMIEVEAIRSELNRRSSGSEFDLDFDRNTTIGALKKKRAGMDLSGGSCITEDAVDDST 235
CDDM + E +R+ELN+RS +EF+++ DR T ++KR M+L+ + + +D S
Sbjct: 545 CDDMTDAEVVRAELNKRSFAAEFEMELDRKTNTEVRRRKRTMMELADDFSLNNEVIDTSF 604
Query: 236 DWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAIDRHKPWMKPR 295
D NSD+CC CKMDGSL+CCDGCPAAYHSKCVG+A+ LPEGDW+CPECA DR P +KP
Sbjct: 605 DRNSDDCCFCKMDGSLLCCDGCPAAYHSKCVGLASHLLPEGDWYCPECAFDRRAPGLKPD 664
Query: 296 KSLRGAELFGVDPYGRLYFSSCGYLLVL 323
K +RGAE +DP+GR Y+SSCGYLLV+
Sbjct: 665 KQIRGAEFIEIDPHGRKYYSSCGYLLVI 692
>AT5G22760.1 | Symbols: | PHD finger family protein |
chr5:7571635-7577662 FORWARD
Length = 1566
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 177/333 (53%), Gaps = 35/333 (10%)
Query: 26 LPPKAQLPPSSQNLDLSGISISDFFSVYACLRXXXXXXXXXXXXXXXXVAALKCNSPSAL 85
L P +LP SS + + ++ SVY LR V AL P++L
Sbjct: 169 LVPPVELPSSSGTIGIPEEAVVYLLSVYGFLRSFSVQLYICPFGLDDFVGALNFLGPNSL 228
Query: 86 FDCIHVSVLQTLRKHLECLSNEGSESASNCLRSLDWDLLDLNTWPVFMVEYLLIHGSDLK 145
D +HV++++ L+ HLE LS+EGSE AS CLR +DW LLD TWPV++V+Y G
Sbjct: 229 LDAVHVALMRALKGHLERLSSEGSEVASKCLRCIDWSLLDALTWPVYLVQYFAAMGHASG 288
Query: 146 PGFDLTLLKLLKSDYYKQSVSVKVEILRCLCDDMIEVEAIRSEL-NRRSSGSEFDLD--- 201
P + +++ +Y V +K++IL+ LCDD+ +V +R+E+ NR S FD D
Sbjct: 289 PLWRFFNEFVVEKEYCSSPVVMKLKILQILCDDVFDVADLRAEIDNREESEVGFDTDGVT 348
Query: 202 -----------FDRNTTIGALKKKRAGMDLSGGSCITEDAVDDSTDW------------- 237
R A K+K ++ I+ ++ DS +W
Sbjct: 349 AELPENGPRRVHPRFAKTSASKEKELSEFVAVNHGIS--SLSDSKNWSSRYTDGGPNGDS 406
Query: 238 -----NSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAIDRHKPWM 292
NSDEC LC MDG+L+CCDGCP AYHS+C+GV +P+G W+CPEC I + P +
Sbjct: 407 PDLDANSDECRLCGMDGTLLCCDGCPLAYHSRCIGVVKMYIPDGPWYCPECTIKKMGPTV 466
Query: 293 KPRKSLRGAELFGVDPYGRLYFSSCGYLLVLLV 325
+ SLRGA FGVDP+GRL+ +C LLVL +
Sbjct: 467 VYKTSLRGAVYFGVDPHGRLFLGTCNLLLVLKI 499
>AT5G35210.1 | Symbols: | peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein | chr5:13474499-13482238 REVERSE
Length = 1576
Score = 205 bits (521), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 167/306 (54%), Gaps = 27/306 (8%)
Query: 35 SSQNLDLSGISISDFFSVYACLRXXXXXXXXXXXXXXXXVAALKCNSPSALFDCIHVSVL 94
SS + + +++ SVY LR V AL + P++L D +HV++L
Sbjct: 184 SSGTIGIPEEAVAHLLSVYGFLRSFSFQLYICPFELNDFVGALYFSGPNSLLDAVHVALL 243
Query: 95 QTLRKHLECLSNEGSESASNCLRSLDWDLLDLNTWPVFMVEYLLIHGSDLKPGFDLTLLK 154
+ L+ HLE LS+ S AS CLR +DW LLD+ TWPV++V+Y G P +++
Sbjct: 244 RALKGHLERLSSSKSVLASKCLRCIDWSLLDVLTWPVYLVQYFTAMGHASGPQWNIFNKF 303
Query: 155 LLKSDYYKQSVSVKVEILRCLCDDMIEVEAIRSELNRRSSGSEFDLDFDRNTTIGALKK- 213
+++ +YY + +K++IL+ LCDD+ +V +R E++ R SE D DR T G L+
Sbjct: 304 VVEIEYYSLPIGMKLKILQILCDDIFDVADLRDEIDAREE-SEIGFDPDRVAT-GLLENV 361
Query: 214 -KRAGMDLSGGSCITEDAVDDST-----------------------DWNSDECCLCKMDG 249
+R + S E V DS+ D NSDEC +C MDG
Sbjct: 362 PRRVHPRFAKTSAYKEKEVTDSSTNESKDLDSRCTNGGSNEVSSDLDGNSDECRICGMDG 421
Query: 250 SLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAIDRHKPWMKPRKSLRGAELFGVDPY 309
+L+CCDGCP AYHS+C+GV +P+G WFCPEC I++ P + SLRGA FG+DP+
Sbjct: 422 TLLCCDGCPLAYHSRCIGVVKMYIPDGPWFCPECTINKKGPKIAHGTSLRGAVQFGMDPH 481
Query: 310 GRLYFS 315
GRL+
Sbjct: 482 GRLFLG 487
>AT5G35210.2 | Symbols: | peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein | chr5:13476213-13482238 REVERSE
Length = 1409
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 167/306 (54%), Gaps = 27/306 (8%)
Query: 35 SSQNLDLSGISISDFFSVYACLRXXXXXXXXXXXXXXXXVAALKCNSPSALFDCIHVSVL 94
SS + + +++ SVY LR V AL + P++L D +HV++L
Sbjct: 184 SSGTIGIPEEAVAHLLSVYGFLRSFSFQLYICPFELNDFVGALYFSGPNSLLDAVHVALL 243
Query: 95 QTLRKHLECLSNEGSESASNCLRSLDWDLLDLNTWPVFMVEYLLIHGSDLKPGFDLTLLK 154
+ L+ HLE LS+ S AS CLR +DW LLD+ TWPV++V+Y G P +++
Sbjct: 244 RALKGHLERLSSSKSVLASKCLRCIDWSLLDVLTWPVYLVQYFTAMGHASGPQWNIFNKF 303
Query: 155 LLKSDYYKQSVSVKVEILRCLCDDMIEVEAIRSELNRRSSGSEFDLDFDRNTTIGALKK- 213
+++ +YY + +K++IL+ LCDD+ +V +R E++ R SE D DR T G L+
Sbjct: 304 VVEIEYYSLPIGMKLKILQILCDDIFDVADLRDEIDAREE-SEIGFDPDRVAT-GLLENV 361
Query: 214 -KRAGMDLSGGSCITEDAVDDST-----------------------DWNSDECCLCKMDG 249
+R + S E V DS+ D NSDEC +C MDG
Sbjct: 362 PRRVHPRFAKTSAYKEKEVTDSSTNESKDLDSRCTNGGSNEVSSDLDGNSDECRICGMDG 421
Query: 250 SLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAIDRHKPWMKPRKSLRGAELFGVDPY 309
+L+CCDGCP AYHS+C+GV +P+G WFCPEC I++ P + SLRGA FG+DP+
Sbjct: 422 TLLCCDGCPLAYHSRCIGVVKMYIPDGPWFCPECTINKKGPKIAHGTSLRGAVQFGMDPH 481
Query: 310 GRLYFS 315
GRL+
Sbjct: 482 GRLFLG 487
>AT1G05380.2 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1138
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 242 CCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
C +C G LICCDGCP+ YH C+G+ LP GDW CP C
Sbjct: 628 CGICGDGGDLICCDGCPSTYHQNCLGM--QVLPSGDWHCPNCT 668
>AT1G05380.1 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1138
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 242 CCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
C +C G LICCDGCP+ YH C+G+ LP GDW CP C
Sbjct: 628 CGICGDGGDLICCDGCPSTYHQNCLGM--QVLPSGDWHCPNCT 668
>AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
binding / DNA binding / chromatin binding / helicase/
nucleic acid binding / protein binding / zinc ion
binding | chr5:18083659-18092162 REVERSE
Length = 2242
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 235 TDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
D N EC +C + G L+CCD CP YH+ C+ +P G W CP+C+
Sbjct: 71 NDGNYFECVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKCS 120
>AT5G58610.1 | Symbols: | PHD finger transcription factor, putative
| chr5:23686771-23691053 REVERSE
Length = 1065
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 242 CCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
C +C G LI CDGCP+A+H+ C+G+ + +P+GDWFC C
Sbjct: 697 CSVCHYGGKLILCDGCPSAFHANCLGL--EDVPDGDWFCQSC 736
>AT3G14980.1 | Symbols: | PHD finger transcription factor, putative
| chr3:5039931-5044811 REVERSE
Length = 1189
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 228 EDAVDDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
E A DD D N D C +C G LICCD CP+ +H C+ + LPEG W+C C
Sbjct: 717 EKASDD--DPNDDSCGVCGDGGELICCDNCPSTFHQACLSM--QVLPEGSWYCSSCT 769
>AT5G36740.1 | Symbols: | PHD finger family protein |
chr5:14460790-14465727 FORWARD
Length = 1179
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 234 STDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
S D N D C +C G LICCDGCP+ +H C+ + P G W+C C+
Sbjct: 645 SGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIK--KFPSGAWYCYNCS 693
>AT5G36670.1 | Symbols: | PHD finger family protein |
chr5:14401491-14406427 FORWARD
Length = 1193
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 234 STDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
S D N D C +C G LICCDGCP+ +H C+ + P G W+C C+
Sbjct: 645 SGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIK--KFPSGAWYCYNCS 693
>AT5G63900.1 | Symbols: | PHD finger family protein |
chr5:25568698-25570371 FORWARD
Length = 557
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 232 DDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGD-WF 279
D S D N D CC+C G L+ CDGCP+A+H C+G++ SLPE D WF
Sbjct: 249 DCSPDMNCDVCCVCHWGGDLLLCDGCPSAFHHACLGLS--SLPEEDLWF 295
>AT2G37520.1 | Symbols: | PHD finger family protein |
chr2:15745033-15749615 REVERSE
Length = 854
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 218 MDLSGGSCITEDAVDDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGD 277
M L+ G IT DD C +C G L+ C GCP A+H+ C+ S+PEG
Sbjct: 479 MSLANGHVITTGDSDDM-------CSICGDGGDLLLCAGCPQAFHTACLKF--QSMPEGT 529
Query: 278 WFCPEC 283
W+C C
Sbjct: 530 WYCSSC 535
>AT2G36720.1 | Symbols: | PHD finger transcription factor, putative
| chr2:15393447-15399189 FORWARD
Length = 1007
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 234 STDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAIDRHKPWMK 293
S + N+D C +C G+L+ CD CP A+H +CV + S+P G+W C C ++ +
Sbjct: 610 SANDNNDLCVICADGGNLLLCDSCPRAFHIECVSLP--SIPRGNWHCKYCE-NKFTSEIA 666
Query: 294 PRKSLRGA---ELFGVDPYGRL 312
++ + +L GVDP +L
Sbjct: 667 GEYNVNSSAVGQLEGVDPVDQL 688
>AT3G53680.1 | Symbols: | PHD finger transcription factor, putative
| chr3:19892863-19897412 REVERSE
Length = 839
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 222 GGSCITEDAVDDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCP 281
GG IT DD C +C G L+ C GCP A+H+ C+ S+PEG W+C
Sbjct: 476 GGHVITTGDSDDM-------CSICGNGGDLLLCAGCPQAFHTACLKF--QSMPEGTWYCS 526
Query: 282 EC 283
C
Sbjct: 527 SC 528
>AT4G14920.1 | Symbols: | DNA binding / protein binding / zinc ion
binding | chr4:8531157-8535842 REVERSE
Length = 1110
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 236 DWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWF 279
D N D C +C G L+CCDGCP+ +H +C+ + +P DW
Sbjct: 649 DPNDDACGICGDGGDLVCCDGCPSTFHQRCLDIRGHLMP--DWI 690