Jatropha Genome Database

JcCB0288881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0288881.10 - phase: 0 /partial
         (160 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66760.1 | Symbols: SDH1-1 | SDH1-1; ATP binding / succinate ...   130   4e-31
AT2G18450.1 | Symbols: SDH1-2 | SDH1-2; succinate dehydrogenase ...   129   8e-31
AT5G14760.1 | Symbols: AO | AO (L-ASPARTATE OXIDASE); L-aspartat...    49   2e-06

>AT5G66760.1 | Symbols: SDH1-1 | SDH1-1; ATP binding / succinate
           dehydrogenase | chr5:26653776-26657224 FORWARD
          Length = 634

 Score =  130 bits (327), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/71 (83%), Positives = 62/71 (87%)

Query: 89  LGYSGSCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAG 148
           +   GSCQGVIALNMEDGTLHRFR++ TILATGGYGRAYFSATSAHTCTGDGNAMVARAG
Sbjct: 214 MASDGSCQGVIALNMEDGTLHRFRSSQTILATGGYGRAYFSATSAHTCTGDGNAMVARAG 273

Query: 149 LPLQILSLFNF 159
           LPLQ L    F
Sbjct: 274 LPLQDLEFVQF 284


>AT2G18450.1 | Symbols: SDH1-2 | SDH1-2; succinate dehydrogenase |
           chr2:7997510-8000801 REVERSE
          Length = 632

 Score =  129 bits (324), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/67 (88%), Positives = 60/67 (89%)

Query: 93  GSCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQ 152
           G+CQGVIALNMEDGTLHRF A STILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQ
Sbjct: 216 GTCQGVIALNMEDGTLHRFHAGSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQ 275

Query: 153 ILSLFNF 159
            L    F
Sbjct: 276 DLEFVQF 282


>AT5G14760.1 | Symbols: AO | AO (L-ASPARTATE OXIDASE); L-aspartate
           oxidase/ electron carrier/ oxidoreductase |
           chr5:4769133-4772012 FORWARD
          Length = 651

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 77  NVACVENYMVVGL-----GYSGSCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSAT 131
           N++  +++  + L     G +  C GV  LN++   + RF +  T+LA+GG G  Y S T
Sbjct: 225 NISVFKHHFAIDLLTSQDGLNTVCHGVDTLNIKTNEVVRFISKVTLLASGGAGHIYPSTT 284

Query: 132 SAHTCTGDGNAMVARAGLPLQILSLFNF 159
           +    TGDG AM  RA   +  +    F
Sbjct: 285 NPLVATGDGMAMAHRAQAVISNMEFVQF 312