Jatropha Genome Database

JcCB0288671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0288671.10 - phase: 0 /pseudo
         (255 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative ...   266   9e-72
AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968)...   145   3e-35
AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative ...   141   4e-34
AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968)...   139   2e-33
AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775)...   101   6e-22

>AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative |
           chr1:29112194-29114323 REVERSE
          Length = 369

 Score =  266 bits (680), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 147/196 (75%), Gaps = 6/196 (3%)

Query: 1   MNEKESFMDIDGDENEDQKQNDSYETNKGKNVVVAGTPPDIKAVPWVEKYRPQSLADVAA 60
           M E  S MDID DE + +K       NKGK+VV  G PP  KA PWVEKYRPQSL DVAA
Sbjct: 1   MTELTSAMDIDVDEIQPRK-----PINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAA 55

Query: 61  HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 120
           HRDI+DTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG +Y NMILELNASDDRG
Sbjct: 56  HRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRG 115

Query: 121 IGVVRQQIXXXXXXXXXXXXXXXXXXXXXXXEADAMTKDAQFALRRVIEKYTKNTRFTLI 180
           I VVRQQI                       EADAMTKDAQFALRRVIEKYTK+TRF LI
Sbjct: 116 IDVVRQQI-QDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALI 174

Query: 181 CNHVNKIIPALQSRCT 196
            NHVNKIIPALQSRCT
Sbjct: 175 GNHVNKIIPALQSRCT 190


>AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968);
           ATP binding / ATPase/ DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr1:7615675-7618362 FORWARD
          Length = 339

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 95/157 (60%), Gaps = 6/157 (3%)

Query: 45  PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 104
           PWVEKYRP+ + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 105 Q-YHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXXX-----XXXXXXXXEADAMTK 158
           + Y + +LELNASDDRGI VVR +I                            EAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 159 DAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQSRC 195
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166


>AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative |
           chr1:23422068-23423771 REVERSE
          Length = 333

 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 91/154 (59%), Gaps = 2/154 (1%)

Query: 45  PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 104
           PWVEKYRP  + D+  + D V  +  +  +  +P+L+L GPPGTGKT++ILA+A +L G 
Sbjct: 16  PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGT 75

Query: 105 QYHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXXXXXXXXXXXEADAMTKDAQFAL 164
            Y   +LELNASDDRGI VVR +I                       EAD+MT  AQ AL
Sbjct: 76  NYKEAVLELNASDDRGIDVVRNKI--KMFAQKKVTLPPGRHKVVILDEADSMTSGAQQAL 133

Query: 165 RRVIEKYTKNTRFTLICNHVNKIIPALQSRCTTV 198
           RR IE Y+ +TRF L CN   KII  +QSRC  V
Sbjct: 134 RRTIEIYSNSTRFALACNTSAKIIEPIQSRCALV 167


>AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968);
           ATP binding / ATPase/ DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr1:7615675-7618362 FORWARD
          Length = 327

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 93/157 (59%), Gaps = 18/157 (11%)

Query: 45  PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 104
           PWVEKYRP+ + DVA   ++             PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57

Query: 105 Q-YHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXXX-----XXXXXXXXEADAMTK 158
           + Y + +LELNASDDRGI VVR +I                            EAD+MT+
Sbjct: 58  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 117

Query: 159 DAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQSRC 195
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 154


>AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775);
           DNA binding / nucleoside-triphosphatase/ nucleotide
           binding | chr5:9823831-9826869 FORWARD
          Length = 354

 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 29/184 (15%)

Query: 46  WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 105
           WV+KYRP+SL  V  H DI   + +L SE   PHLL YGP G+GK + I+A+ +++YGA 
Sbjct: 3   WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62

Query: 106 YHNMILELNA--------------------------SDDRGIG---VVRQQIXXXXXXXX 136
              + +E  A                            D G     +V++ I        
Sbjct: 63  AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query: 137 XXXXXXXXXXXXXXXEADAMTKDAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQSRCT 196
                          E D ++++AQ +LRR +EKY+ + R  L CN  +K+  A++SRC 
Sbjct: 123 IDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCL 182

Query: 197 TVSI 200
            V I
Sbjct: 183 NVRI 186