Jatropha Genome Database

JcCB0287701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0287701.10 - phase: 0 /partial/short
         (41 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03260.1 | Symbols:  | LOCATED IN: endomembrane system; EXPRE...    62   7e-11
AT5G19070.1 | Symbols:  | LOCATED IN: endomembrane system; EXPRE...    54   2e-08

>AT1G03260.1 | Symbols:  | LOCATED IN: endomembrane system;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: SNARE
           associated Golgi protein (InterPro:IPR015414); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins
           in 730 species: Archae - 8; Bacteria - 1831; Metazoa -
           239; Fungi - 87; Plants - 162; Viruses - 0; Other
           Eukaryotes - 1105 (source: NCBI BLink). |
           chr1:795678-798102 REVERSE
          Length = 274

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 30/32 (93%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTTRWV 32
           PITFALVY+GTTLKDLSD+THGW+EVS  RWV
Sbjct: 175 PITFALVYVGTTLKDLSDITHGWHEVSVFRWV 206


>AT5G19070.1 | Symbols:  | LOCATED IN: endomembrane system;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: SNARE
           associated Golgi protein (InterPro:IPR015414); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G03260.1); Has 3029 Blast hits to 3029 proteins
           in 693 species: Archae - 10; Bacteria - 1724; Metazoa -
           229; Fungi - 74; Plants - 161; Viruses - 0; Other
           Eukaryotes - 831 (source: NCBI BLink). |
           chr5:6375569-6377470 FORWARD
          Length = 280

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 26/31 (83%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTTRW 31
           PIT ALVY+GTTLKDLSDVTH W+E S  RW
Sbjct: 173 PITLALVYVGTTLKDLSDVTHKWSEFSPGRW 203