Jatropha Genome Database

JcCB0286801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0286801.10 - phase: 0 /partial
         (218 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75340.1 | Symbols:  | zinc finger (CCCH-type) family protein...    94   8e-20

>AT1G75340.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr1:28269153-28271873 REVERSE
          Length = 435

 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 120/270 (44%), Gaps = 54/270 (20%)

Query: 1   VERERNLLNSKLIEFENLIRNPYVAPAKSALSQSPFAGVTPPAIATSDQNNAP-PLVSSF 59
           VERERNL NSK+ EFEN +RNPY     +  +QSPFA  TP     S Q N+P P  S F
Sbjct: 168 VERERNLQNSKIAEFENFLRNPYKGSVTA--NQSPFAATTPSIFPQSSQINSPSPAFSGF 225

Query: 60  SQLGPSLNVESGTRPSSSSNNAF--------------------GQPNIL------SNSSQ 93
           +Q     N  +G   SS   NAF                    G PN        SN+ Q
Sbjct: 226 NQQTAFSNTNAGGLSSSGPPNAFASFNQQTTFPNTNAGGVSSSGPPNPFASFTQQSNNQQ 285

Query: 94  TSGS----FGISNFAPANSGSISSQLPNQASGN---PFSSNVAGF-SNSSAIIN------ 139
           T+ S     G+S+  P N+ +  ++ PN  S N   P  S  +GF +N S          
Sbjct: 286 TAFSNTNAGGLSSSGPPNAFASFNKQPNAFSVNTPQPVPSGPSGFQTNPSTTFKPASFGP 345

Query: 140 ---------QSNPFDSSAVTKQVTNSSTAQHVIISNSPNLASNAVGQATEHIHSTNGMQK 190
                     +N F  S  T     S   Q     N P  +  A    T +  S   +Q 
Sbjct: 346 GPGFATTPQNNNIFGQSTPTPATNTSQNNQTAFNFNVPVASFTAPAINTTNTSSGTELQI 405

Query: 191 GA--VDASIWLKESWNPGEIPEEAPPDQYI 218
           G   VD+SIWLKE WNPGEIPE+APPD ++
Sbjct: 406 GGDPVDSSIWLKEKWNPGEIPEQAPPDAFV 435