Jatropha Genome Database
- JcCB0286581.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0286581.10 - phase: 0
(232 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35190.1 | Symbols: | unknown protein | chr4:16746724-167480... 370 e-103
AT5G06300.1 | Symbols: | carboxy-lyase | chr5:1922042-1925278 R... 320 7e-88
AT2G37210.1 | Symbols: | Encodes a protein of unknown function.... 318 2e-87
AT2G28305.1 | Symbols: | unknown protein | chr2:12081186-120843... 317 5e-87
AT3G53450.1 | Symbols: | unknown protein | chr3:19812977-198154... 314 3e-86
AT2G35990.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 295 1e-80
AT5G11950.2 | Symbols: | protein homodimerization | chr5:385507... 277 3e-75
AT5G11950.1 | Symbols: | protein homodimerization | chr5:385507... 277 3e-75
AT5G03270.1 | Symbols: | unknown protein | chr5:781870-783997 F... 256 6e-69
AT2G35990.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 219 1e-57
AT2G35990.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 219 1e-57
AT5G26140.1 | Symbols: | lysine decarboxylase family protein | ... 149 1e-36
>AT4G35190.1 | Symbols: | unknown protein | chr4:16746724-16748090
FORWARD
Length = 228
Score = 370 bits (949), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/229 (79%), Positives = 198/229 (86%), Gaps = 2/229 (0%)
Query: 4 KLVKSRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVH 63
++VKSRFKRVCVFCGSSSGKRECY DAA +LAQELV +RL+LVYGGGSIGLMGLVSQ VH
Sbjct: 2 EIVKSRFKRVCVFCGSSSGKRECYSDAATDLAQELVTRRLNLVYGGGSIGLMGLVSQAVH 61
Query: 64 EAGRNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGGYGTLEEL 123
EAG +VLGIIPRTLM KEITGET GEV VADMH+RKAEMARHSDCFIALPGGYGTLEEL
Sbjct: 62 EAGGHVLGIIPRTLMDKEITGETYGEVIAVADMHERKAEMARHSDCFIALPGGYGTLEEL 121
Query: 124 LEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQ 183
LEVI WAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQR+IFVSAPNAKELVQ
Sbjct: 122 LEVIAWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRHIFVSAPNAKELVQ 181
Query: 184 KLEEYVPISEGIIAKARWEVHEXXXXXXXXXXXXAVGFNAATLQTEIAL 232
KLE Y P+++G+IAK+RWEV + + ++QTEIAL
Sbjct: 182 KLEAYKPVNDGVIAKSRWEVEKKVQQPQQQQQVVFC--SNTSMQTEIAL 228
>AT5G06300.1 | Symbols: | carboxy-lyase | chr5:1922042-1925278
REVERSE
Length = 217
Score = 320 bits (819), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 151/196 (77%), Positives = 171/196 (87%)
Query: 7 KSRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVHEAG 66
KSRFKR+CVFCGSSSGK+ Y++AAI+L ELVE+R+DLVYGGGS+GLMGLVSQ VH G
Sbjct: 5 KSRFKRICVFCGSSSGKKPSYQEAAIQLGNELVERRIDLVYGGGSVGLMGLVSQAVHHGG 64
Query: 67 RNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 126
R+VLG+IP+TLM +EITGET+GEVK VADMHQRKAEMAR +D FIALPGGYGTLEELLEV
Sbjct: 65 RHVLGVIPKTLMPREITGETIGEVKAVADMHQRKAEMARQADAFIALPGGYGTLEELLEV 124
Query: 127 ITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQKLE 186
ITWAQLGIH KPVGLLNVDGYYN LLTFIDKAVD+GFI P R I VSAPNAKELV++LE
Sbjct: 125 ITWAQLGIHRKPVGLLNVDGYYNSLLTFIDKAVDEGFISPMARRIIVSAPNAKELVRQLE 184
Query: 187 EYVPISEGIIAKARWE 202
EY P + I +K W+
Sbjct: 185 EYEPEFDEITSKLVWD 200
>AT2G37210.1 | Symbols: | Encodes a protein of unknown function.
It has been crystallized and shown to be structurally
almost identical to the protein encoded by At5g11950. |
chr2:15624253-15626834 REVERSE
Length = 215
Score = 318 bits (815), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 147/197 (74%), Positives = 171/197 (86%)
Query: 7 KSRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVHEAG 66
KS+F+R+CVFCGSS GK+ Y+DAA++L ELV + +DLVYGGGSIGLMGLVSQ VH+ G
Sbjct: 10 KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGG 69
Query: 67 RNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 126
R+V+GIIP+TLM +E+TGETVGEV+ VADMHQRKAEMA+HSD FIALPGGYGTLEELLEV
Sbjct: 70 RHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEV 129
Query: 127 ITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQKLE 186
ITWAQLGIHDKPVGLLNVDGYYN LL+FIDKAV++GFI P+ R I VSAP AKELV+KLE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLE 189
Query: 187 EYVPISEGIIAKARWEV 203
EY P E + K WE+
Sbjct: 190 EYAPCHERVATKLCWEM 206
>AT2G28305.1 | Symbols: | unknown protein | chr2:12081186-12084307
FORWARD
Length = 213
Score = 317 bits (811), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 146/200 (73%), Positives = 175/200 (87%)
Query: 6 VKSRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVHEA 65
++S+FKR+CVFCGSS+G + Y+DAAIEL ELV + +DLVYGGGSIGLMGL+SQ V
Sbjct: 3 IESKFKRICVFCGSSAGNKVSYKDAAIELGTELVSRNIDLVYGGGSIGLMGLISQAVFNG 62
Query: 66 GRNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGGYGTLEELLE 125
GR+V+G+IP+TLM +EITGETVGEVK VADMHQRKAEMA+HSD FIALPGGYGTLEELLE
Sbjct: 63 GRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 122
Query: 126 VITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQKL 185
VITWAQLGIHDKPVGLLNV+GYYN LL+FIDKAV++GFI P+ R+I VSAP+AKELV+KL
Sbjct: 123 VITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVSAPSAKELVKKL 182
Query: 186 EEYVPISEGIIAKARWEVHE 205
E+YVP E + +K WE+ +
Sbjct: 183 EDYVPRHEKVASKKSWEMEQ 202
>AT3G53450.1 | Symbols: | unknown protein | chr3:19812977-19815430
REVERSE
Length = 215
Score = 314 bits (804), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 145/197 (73%), Positives = 169/197 (85%)
Query: 7 KSRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVHEAG 66
KS+F R+CVFCGSS GK+ Y+DAA++L ELV + +DLVYGGGSIGLMGLVSQ VH+ G
Sbjct: 10 KSKFGRICVFCGSSQGKKSSYQDAAVDLGNELVLRNIDLVYGGGSIGLMGLVSQAVHDGG 69
Query: 67 RNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 126
R+V+G+IP+TLM +E+TGETVGEV+ VADMHQRKAEMARHSD FIALPGGYGTLEELLEV
Sbjct: 70 RHVIGVIPKTLMPRELTGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEV 129
Query: 127 ITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQKLE 186
ITWAQLGIHDKPVGLLNVDGYYN LL+FIDKAV++GFI + R I +SAP AKELV+KLE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISTNARQIIISAPTAKELVKKLE 189
Query: 187 EYVPISEGIIAKARWEV 203
EY P E + K WE+
Sbjct: 190 EYSPCHESVATKLCWEI 206
>AT2G35990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has
3002 Blast hits to 3001 proteins in 744 species: Archae
- 8; Bacteria - 1757; Metazoa - 10; Fungi - 79; Plants -
185; Viruses - 0; Other Eukaryotes - 963 (source: NCBI
BLink). | chr2:15114070-15116647 FORWARD
Length = 213
Score = 295 bits (755), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 133/197 (67%), Positives = 164/197 (83%)
Query: 6 VKSRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVHEA 65
KSRF+R+CVFCGSSSG + Y DAA++LA +LVE+ +DLVYGGGS+GLMGL+SQ VH+
Sbjct: 4 TKSRFRRICVFCGSSSGNKTTYHDAALQLAHQLVERNIDLVYGGGSVGLMGLISQAVHDG 63
Query: 66 GRNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGGYGTLEELLE 125
GR+VLGIIP++L +EITGE++GEV V+ MHQRKAEM R +D FIALPGGYGT EELLE
Sbjct: 64 GRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALPGGYGTFEELLE 123
Query: 126 VITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQKL 185
VITW+QLGIH KPVGLLNVDG+Y+ LLTFIDKAVD+GF+ + R I VSAPNA +L+Q L
Sbjct: 124 VITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVSAPNAPQLLQLL 183
Query: 186 EEYVPISEGIIAKARWE 202
EEYVP + ++K W+
Sbjct: 184 EEYVPKHDDFVSKMVWD 200
>AT5G11950.2 | Symbols: | protein homodimerization |
chr5:3855072-3856815 FORWARD
Length = 216
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 128/199 (64%), Positives = 161/199 (80%)
Query: 7 KSRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVHEAG 66
+SRF+++CVFCGS SG RE + DAAIEL ELV++++DLVYGGGS+GLMGL+S+ V+E G
Sbjct: 6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGG 65
Query: 67 RNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 126
+VLGIIP+ LM EI+GETVG+V+ VADMH+RKA MA+ ++ FIALPGGYGT+EELLE+
Sbjct: 66 LHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEM 125
Query: 127 ITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQKLE 186
ITW+QLGIH K VGLLNVDGYYN LL D V++GFIKP RNI VSAP AKEL++K+E
Sbjct: 126 ITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 185
Query: 187 EYVPISEGIIAKARWEVHE 205
EY P + + W+V E
Sbjct: 186 EYTPSHMHVASHESWKVEE 204
>AT5G11950.1 | Symbols: | protein homodimerization |
chr5:3855072-3856815 FORWARD
Length = 216
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 128/199 (64%), Positives = 161/199 (80%)
Query: 7 KSRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVHEAG 66
+SRF+++CVFCGS SG RE + DAAIEL ELV++++DLVYGGGS+GLMGL+S+ V+E G
Sbjct: 6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGG 65
Query: 67 RNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 126
+VLGIIP+ LM EI+GETVG+V+ VADMH+RKA MA+ ++ FIALPGGYGT+EELLE+
Sbjct: 66 LHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEM 125
Query: 127 ITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQKLE 186
ITW+QLGIH K VGLLNVDGYYN LL D V++GFIKP RNI VSAP AKEL++K+E
Sbjct: 126 ITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 185
Query: 187 EYVPISEGIIAKARWEVHE 205
EY P + + W+V E
Sbjct: 186 EYTPSHMHVASHESWKVEE 204
>AT5G03270.1 | Symbols: | unknown protein | chr5:781870-783997
FORWARD
Length = 229
Score = 256 bits (655), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 128/190 (67%), Positives = 151/190 (79%), Gaps = 11/190 (5%)
Query: 8 SRFKRVCVFCGSSSGKRECYRDAAIELAQELVEKRLDLVYGGGSIGLMGLVSQTVHEAGR 67
SRFK +CVFCGSS+G + Y+DAAI+LA+ELV +++DLVYGGGSIGLMGLVSQ VH+ GR
Sbjct: 16 SRFKSICVFCGSSNGNKASYQDAAIDLAKELVMRKIDLVYGGGSIGLMGLVSQAVHDGGR 75
Query: 68 NVLGI-----------IPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGG 116
+ + + + ++TGETVGEVK VADMHQRKA MA+HSD FI LPGG
Sbjct: 76 HNNNNNGNDDALFCHSVNVSQTNSKLTGETVGEVKEVADMHQRKAVMAKHSDAFITLPGG 135
Query: 117 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAP 176
YGTLEELLEVITWAQLGIHDKPVGLLNVDGYY+ LL FIDKAV++GFI P+ R+I VSAP
Sbjct: 136 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYDALLLFIDKAVEEGFILPTARHIIVSAP 195
Query: 177 NAKELVQKLE 186
A+EL KLE
Sbjct: 196 TARELFIKLE 205
>AT2G35990.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1). |
chr2:15114733-15116647 FORWARD
Length = 161
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/148 (67%), Positives = 122/148 (82%)
Query: 55 MGLVSQTVHEAGRNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALP 114
MGL+SQ VH+ GR+VLGIIP++L +EITGE++GEV V+ MHQRKAEM R +D FIALP
Sbjct: 1 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 60
Query: 115 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVS 174
GGYGT EELLEVITW+QLGIH KPVGLLNVDG+Y+ LLTFIDKAVD+GF+ + R I VS
Sbjct: 61 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 120
Query: 175 APNAKELVQKLEEYVPISEGIIAKARWE 202
APNA +L+Q LEEYVP + ++K W+
Sbjct: 121 APNAPQLLQLLEEYVPKHDDFVSKMVWD 148
>AT2G35990.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has
2269 Blast hits to 2268 proteins in 637 species: Archae
- 6; Bacteria - 1228; Metazoa - 8; Fungi - 85; Plants -
183; Viruses - 0; Other Eukaryotes - 759 (source: NCBI
BLink). | chr2:15114733-15116647 FORWARD
Length = 161
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/148 (67%), Positives = 122/148 (82%)
Query: 55 MGLVSQTVHEAGRNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARHSDCFIALP 114
MGL+SQ VH+ GR+VLGIIP++L +EITGE++GEV V+ MHQRKAEM R +D FIALP
Sbjct: 1 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 60
Query: 115 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVS 174
GGYGT EELLEVITW+QLGIH KPVGLLNVDG+Y+ LLTFIDKAVD+GF+ + R I VS
Sbjct: 61 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 120
Query: 175 APNAKELVQKLEEYVPISEGIIAKARWE 202
APNA +L+Q LEEYVP + ++K W+
Sbjct: 121 APNAPQLLQLLEEYVPKHDDFVSKMVWD 148
>AT5G26140.1 | Symbols: | lysine decarboxylase family protein |
chr5:9130796-9131636 FORWARD
Length = 143
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Query: 80 KEITGETVGEVKPVADMHQRKAEMARHSDCFIALPGG-YGTLEELLEVITWAQLGIHDKP 138
+ I+GETVGEV+ V+DMH+RKA MA+ + FIAL G Y T+EELLE+ITWAQLGIH K
Sbjct: 4 EHISGETVGEVRIVSDMHERKATMAQEAGAFIALLGERYETMEELLEMITWAQLGIHKKT 63
Query: 139 VGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFVSAPNAKELVQKLEEYVPISEGIIAK 198
VGLLNVDGYYN LL F D V++GFIK NI VSAP+A+EL++K+E Y P + I +
Sbjct: 64 VGLLNVDGYYNNLLAFFDTGVEEGFIKQGACNIVVSAPSARELMEKMELYTPSHKYIASH 123
Query: 199 ARWEV 203
W+V
Sbjct: 124 QSWKV 128