Jatropha Genome Database

JcCB0285631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285631.20 - phase: 1 /pseudo/partial
         (90 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37510.1 | Symbols:  | RNA-binding protein, putative | chr2:1...    52   6e-08

>AT2G37510.1 | Symbols:  | RNA-binding protein, putative |
           chr2:15743112-15744504 REVERSE
          Length = 142

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 39/50 (78%), Gaps = 2/50 (4%)

Query: 42  RENMNAKYLDGWVIFVDPAKPREQRPP--PSPVQEPTDTGYRTNKTIGWC 89
           +  MNAK+LDGWVIFVDPA+PRE R P    P++  +++G+ TNKTIGWC
Sbjct: 92  KAEMNAKFLDGWVIFVDPARPREPRRPLQQEPLRPSSESGFTTNKTIGWC 141