Jatropha Genome Database

JcCB0285121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285121.10 + phase: 1 /pseudo/partial
         (241 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12080.2 | Symbols: emb2738 | emb2738 (embryo defective 2738)...   391   e-109
AT3G12080.1 | Symbols: emb2738 | emb2738 (embryo defective 2738)...   390   e-109
AT5G39960.1 | Symbols:  | GTP-binding family protein | chr5:1599...   101   5e-22
AT1G78010.1 | Symbols:  | tRNA modification GTPase, putative | c...    93   2e-19

>AT3G12080.2 | Symbols: emb2738 | emb2738 (embryo defective 2738);
           GTP binding | chr3:3847851-3851677 FORWARD
          Length = 587

 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/220 (83%), Positives = 208/220 (94%)

Query: 22  YIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAG 81
           YIPAIAI+GRPNVGKSSILNAL+REDRTIVSP+SGTTRDAID EF+GPDG+KFRLIDTAG
Sbjct: 367 YIPAIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAG 426

Query: 82  IRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKGC 141
           IR++++VASSGS TEA+SVNRAFRAIRRSDVVALVIEAMACITEQD +IAERIE+EGKGC
Sbjct: 427 IRKKSSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGC 486

Query: 142 LIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIIDAASAVEK 201
           L+VVNKWDTIPNKNQ+TA +YE DVREKLR+L WAP+VYSTAI G SV+ I+ AA+ V+K
Sbjct: 487 LVVVNKWDTIPNKNQETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIVVAAATVQK 546

Query: 202 ERSRRLSTAILNQVVGEALAFKSPPRTRGGKRGRIYYCTQ 241
           ERSRRLSTAILNQV+ EA+AFKSPPRTRGGKRGR+YYCTQ
Sbjct: 547 ERSRRLSTAILNQVIREAVAFKSPPRTRGGKRGRVYYCTQ 586



 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 45/205 (21%)

Query: 20  ENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDT 79
           E+ +  +AIVGRPNVGKS++ N L+ E+R IV    G TRD +       D Q+F ++DT
Sbjct: 155 EHLLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGD-QEFVVVDT 213

Query: 80  AGI----------------------------RRRAAVASSGSVTEALSVNRAFRAIRRSD 111
            G+                             R AA+A   S+ E     +A  A+  S 
Sbjct: 214 GGVMTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIE----KQATAAVDESA 269

Query: 112 VVALVIEAMACITEQDYRIAERIEK--EGKGCLIVVNKWDTIPNKNQQTAMYYEQDVREK 169
           V+  V++  A  +  D  IA+ + K    K  ++ VNK ++ P K    A         +
Sbjct: 270 VIIFVVDGQAGPSGADVEIADWLRKYYSHKYIILAVNKCES-PRKGLMQA--------SE 320

Query: 170 LRTLHWAPVVYSTAIAGRSVEKIID 194
             +L + P+  S A++G    +++D
Sbjct: 321 FWSLGFTPIPIS-ALSGTGTGELLD 344


>AT3G12080.1 | Symbols: emb2738 | emb2738 (embryo defective 2738);
           GTP binding | chr3:3847851-3851980 FORWARD
          Length = 663

 Score =  390 bits (1003), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/220 (83%), Positives = 208/220 (94%)

Query: 22  YIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAG 81
           YIPAIAI+GRPNVGKSSILNAL+REDRTIVSP+SGTTRDAID EF+GPDG+KFRLIDTAG
Sbjct: 367 YIPAIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAG 426

Query: 82  IRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKGC 141
           IR++++VASSGS TEA+SVNRAFRAIRRSDVVALVIEAMACITEQD +IAERIE+EGKGC
Sbjct: 427 IRKKSSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGC 486

Query: 142 LIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIIDAASAVEK 201
           L+VVNKWDTIPNKNQ+TA +YE DVREKLR+L WAP+VYSTAI G SV+ I+ AA+ V+K
Sbjct: 487 LVVVNKWDTIPNKNQETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIVVAAATVQK 546

Query: 202 ERSRRLSTAILNQVVGEALAFKSPPRTRGGKRGRIYYCTQ 241
           ERSRRLSTAILNQV+ EA+AFKSPPRTRGGKRGR+YYCTQ
Sbjct: 547 ERSRRLSTAILNQVIREAVAFKSPPRTRGGKRGRVYYCTQ 586



 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 45/205 (21%)

Query: 20  ENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDT 79
           E+ +  +AIVGRPNVGKS++ N L+ E+R IV    G TRD +       D Q+F ++DT
Sbjct: 155 EHLLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGD-QEFVVVDT 213

Query: 80  AGI----------------------------RRRAAVASSGSVTEALSVNRAFRAIRRSD 111
            G+                             R AA+A   S+ E     +A  A+  S 
Sbjct: 214 GGVMTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIE----KQATAAVDESA 269

Query: 112 VVALVIEAMACITEQDYRIAERIEK--EGKGCLIVVNKWDTIPNKNQQTAMYYEQDVREK 169
           V+  V++  A  +  D  IA+ + K    K  ++ VNK ++ P K    A         +
Sbjct: 270 VIIFVVDGQAGPSGADVEIADWLRKYYSHKYIILAVNKCES-PRKGLMQA--------SE 320

Query: 170 LRTLHWAPVVYSTAIAGRSVEKIID 194
             +L + P+  S A++G    +++D
Sbjct: 321 FWSLGFTPIPIS-ALSGTGTGELLD 344


>AT5G39960.1 | Symbols:  | GTP-binding family protein |
           chr5:15994195-15996820 FORWARD
          Length = 616

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 134/242 (55%), Gaps = 22/242 (9%)

Query: 15  NLGEE--ENYIP-AIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDG 71
           NL +E  E+ +P  +AIVG+PNVGKS++LNALL E+R +V P +G TRDA+  +F    G
Sbjct: 301 NLSDEIDESKLPLQLAIVGKPNVGKSTLLNALLEEERVLVGPEAGLTRDAVRVQFEF-QG 359

Query: 72  QKFRLIDTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALV------IEAMACITE 125
           +   L+DTAG   R       +   +LS+ ++ +++ R+ V+ALV      I+A   +T 
Sbjct: 360 RTVYLVDTAGWLERTERDKGPA---SLSIMQSRKSLMRAHVIALVLDAEEIIKAKCSMTH 416

Query: 126 QDYRIAERIEKEGKGCLIVVNKWDTIPNKNQQTAMYYE------QDVREKLRTLHWAPVV 179
            +  IA R  +EG+G +++VNK D +  + + + MY +       +++  +  +   PVV
Sbjct: 417 SEVVIARRAVEEGRGLVVIVNKMDRLRGR-ENSEMYKKIKEAVPIEIQTVIPQITGIPVV 475

Query: 180 YSTAIAGRSVEKIIDAASAVEKERSRRLSTAILNQVVGEALAFKSPPRTRGGKRGRIYYC 239
           + +A+ GR   +++   +   K    RLST  LN+ + + ++  S   T    + +I + 
Sbjct: 476 FISALEGRGRMEVMKEVTDTYKRWCSRLSTGRLNRWLRKVMSRHSWKDT--ASQPKIKFF 533

Query: 240 TQ 241
           TQ
Sbjct: 534 TQ 535



 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 19  EENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLID 78
           + N +P + ++GRPNVGKS++ N   RE     +P    TRD I    +     +F ++D
Sbjct: 113 DANLLPTVMLMGRPNVGKSALYN---REALVYNTPDDHVTRD-IREGIAKLGDLRFNVLD 168

Query: 79  TAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEG 138
           +AGI    +  +    T A++ N     + R+    L+I+  A +   D  + + + K  
Sbjct: 169 SAGIETEVSSGTILGRTTAMTAN----VLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHA 224

Query: 139 KGC--LIVVNKWDTI 151
                ++V+NK ++I
Sbjct: 225 PQIKPIVVMNKSESI 239


>AT1G78010.1 | Symbols:  | tRNA modification GTPase, putative |
           chr1:29333535-29336297 FORWARD
          Length = 560

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 99/170 (58%), Gaps = 14/170 (8%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           IAIVGRPNVGKSS+LNA  + +R IV+ ++GTTRD ++   +   G    L+DTAGIR  
Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVT-VRGVPITLLDTAGIRE- 377

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKGCLIVV 145
                +  + E + V R+  A + +DV+ + + A+   TE+D  +  +I+ + K  ++V+
Sbjct: 378 -----TNDIVEKIGVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSD-KPMILVM 431

Query: 146 NKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIIDA 195
           NK D  P  +        +D R+K    H +  V+++A+ G+ +E++ DA
Sbjct: 432 NKIDCAPPGSCDQL----EDQRKKEEVFHKS--VFTSAVTGQGIEELEDA 475