Jatropha Genome Database

JcCB0284961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284961.10 + phase: 0 /pseudo/partial
         (189 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26790.1 | Symbols: FUS3 | FUS3 (FUSCA 3); DNA binding / tran...   198   1e-51
AT3G24650.1 | Symbols: ABI3, SIS10 | ABI3 (ABA INSENSITIVE 3); D...   100   1e-21
AT1G28300.1 | Symbols: LEC2 | LEC2 (LEAFY COTYLEDON 2); DNA bind...    88   3e-18
AT2G30470.1 | Symbols: HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION ...    70   1e-12
AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1);...    65   3e-11
AT4G21550.1 | Symbols: VAL3 | VAL3 (VP1/ABI3-LIKE 3); transcript...    57   5e-09

>AT3G26790.1 | Symbols: FUS3 | FUS3 (FUSCA 3); DNA binding /
           transcription activator/ transcription factor |
           chr3:9854025-9855748 REVERSE
          Length = 313

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/207 (54%), Positives = 131/207 (63%), Gaps = 45/207 (21%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           I+ +KAAEAHLP LE KEGI I M+DLDG HVW+FKYRYWPNNNSRMYVLENTGDFVN H
Sbjct: 108 ILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYWPNNNSRMYVLENTGDFVNAH 167

Query: 85  GLQLGDFIM----------VIQARKASDE-----------DVYAN---IAMTAVNDIFLH 120
           GLQLGDFIM          VIQARKAS+E           DVY N   I  T VND+ L 
Sbjct: 168 GLQLGDFIMVYQDLYSNNYVIQARKASEEEEVDVINLEEDDVYTNLTRIENTVVNDLLLQ 227

Query: 121 DY------------EVNKSSSFYMNYPMVDNTGL---SFIYDTTTIISNDSPLDFLGGSL 165
           D+              +   S+Y  YP++D+      SF+YDTT + SND+PLDFLGG  
Sbjct: 228 DFNHHNNNNNNNSNSNSNKCSYY--YPVIDDVTTNTESFVYDTTALTSNDTPLDFLGGHT 285

Query: 166 TN----YSRIGQMENFGSVENLSLDEF 188
           T     YS+ G  +  GSVEN+SLD+F
Sbjct: 286 TTTNNYYSKFGTFDGLGSVENISLDDF 312


>AT3G24650.1 | Symbols: ABI3, SIS10 | ABI3 (ABA INSENSITIVE 3); DNA
           binding / basal transcription repressor/ transcription
           activator/ transcription factor | chr3:8997911-9000780
           FORWARD
          Length = 720

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 25  IVL-QKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNT 83
           IVL +K AE HLP LE+++GI ++M+D+    VW+ +YR+WPNN SRMY+LENTGDFV T
Sbjct: 587 IVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRYRFWPNNKSRMYLLENTGDFVKT 646

Query: 84  HGLQLGDFIMV 94
           +GLQ GDFI++
Sbjct: 647 NGLQEGDFIVI 657


>AT1G28300.1 | Symbols: LEC2 | LEC2 (LEAFY COTYLEDON 2); DNA binding
           / transcription factor | chr1:9897054-9899838 REVERSE
          Length = 363

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 53/72 (73%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ ++ AEA+LP L  KEGI + M D+  +  WSFKY++W NN SRMYVLENTG+FV  +
Sbjct: 187 VLPKRDAEANLPKLSDKEGIVVQMRDVFSMQSWSFKYKFWSNNKSRMYVLENTGEFVKQN 246

Query: 85  GLQLGDFIMVIQ 96
           G ++GDF+ + +
Sbjct: 247 GAEIGDFLTIYE 258


>AT2G30470.1 | Symbols: HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION OF
           SUGAR-INDUCIBLE GENE 2); transcription factor/
           transcription repressor | chr2:12980904-12984724 REVERSE
          Length = 790

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 12/93 (12%)

Query: 21  RLM*IVLQKA-AEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGD 79
           R+  +VL KA AEA+ P +   EGI + + D+ G   W+F++RYWPNNNSRMYVLE    
Sbjct: 306 RIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGRE-WTFQFRYWPNNNSRMYVLEGVTP 364

Query: 80  FVNTHGLQLGDFI----------MVIQARKASD 102
            + +  LQ GD +          +++ +RKA++
Sbjct: 365 CIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAAN 397


>AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1);
           transcription factor | chr4:15481231-15484897 FORWARD
          Length = 780

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 12/93 (12%)

Query: 21  RLM*IVLQKA-AEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGD 79
           R+  +VL KA AEA+ P +   EG+ + + D+ G   W F++R+WPNNNSRMYVLE    
Sbjct: 297 RIGRLVLPKACAEAYFPPISLPEGLPLKIQDIKGKE-WVFQFRFWPNNNSRMYVLEGVTP 355

Query: 80  FVNTHGLQLGDFI----------MVIQARKASD 102
            + +  LQ GD +          +V+  RKA++
Sbjct: 356 CIQSMQLQAGDTVTFSRTEPEGKLVMGYRKATN 388


>AT4G21550.1 | Symbols: VAL3 | VAL3 (VP1/ABI3-LIKE 3); transcription
           factor | chr4:11463987-11468486 FORWARD
          Length = 721

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ +K AEA LP L   +G+ +++ D  G   W F++R+WP++  R+YVLE    F+ T 
Sbjct: 317 VLPKKYAEAFLPQLSHTKGVPLTVQDPMGKE-WRFQFRFWPSSKGRIYVLEGVTPFIQTL 375

Query: 85  GLQLGDFIM 93
            LQ GD ++
Sbjct: 376 QLQAGDTVI 384