Jatropha Genome Database

JcCB0284841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284841.10 + phase: 0 /partial
         (88 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11390.1 | Symbols:  | ABC1 family protein | chr1:3834762-383...   120   2e-28
AT1G61640.1 | Symbols:  | ABC1 family protein | chr1:22746629-22...   105   5e-24

>AT1G11390.1 | Symbols:  | ABC1 family protein |
           chr1:3834762-3837305 REVERSE
          Length = 624

 Score =  120 bits (301), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 72/91 (79%), Gaps = 3/91 (3%)

Query: 1   EVENCYNSWRSP--NEVNPAECIQQLLEHVRRHKVNIDGDICIVMVTTLVLEGWQQKLDP 58
           EVE  +  W +P  + V+PA+C+ +LLE VRRH+VNIDG++C VMVTTLVLEGWQ+KLDP
Sbjct: 534 EVEEAFKFWGTPEGDLVHPADCMHELLEKVRRHRVNIDGNVCTVMVTTLVLEGWQRKLDP 593

Query: 59  EYNV-SALQSLLFKVDYADSLCYTIEGLMAP 88
            Y+V   LQ+++ K D+A SL YT++GLMAP
Sbjct: 594 GYDVMHTLQTMVLKTDWAKSLSYTVDGLMAP 624


>AT1G61640.1 | Symbols:  | ABC1 family protein |
           chr1:22746629-22749053 REVERSE
          Length = 621

 Score =  105 bits (262), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 3/91 (3%)

Query: 1   EVENCYNSWRSP--NEVNPAECIQQLLEHVRRHKVNIDGDICIVMVTTLVLEGWQQKLDP 58
           EVE  +  W +   + V+PA+C+ +L E +R H+VNIDG++  VM TTLVLEGWQ+KLDP
Sbjct: 531 EVEEAFTFWGTEEGDLVHPADCMHELFEKMRSHRVNIDGNVSTVMFTTLVLEGWQRKLDP 590

Query: 59  EYNV-SALQSLLFKVDYADSLCYTIEGLMAP 88
            Y+V   LQ++L K D+  SL YTI+GLMAP
Sbjct: 591 GYDVMRTLQTMLLKTDWMKSLSYTIDGLMAP 621