Jatropha Genome Database

JcCB0284451.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.30 - phase: 1 /partial
         (113 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17920.2 | Symbols: ATCIMS | ATMS1; 5-methyltetrahydropteroyl...   221   5e-59
AT5G17920.1 | Symbols: ATCIMS, ATMETS, ATMS1 | ATMS1; 5-methylte...   221   5e-59
AT3G03780.3 | Symbols: ATMS2 | AtMS2; 5-methyltetrahydropteroylt...   218   7e-58
AT3G03780.2 | Symbols: ATMS2 | AtMS2; 5-methyltetrahydropteroylt...   218   7e-58
AT3G03780.1 | Symbols: ATMS2 | AtMS2; 5-methyltetrahydropteroylt...   218   7e-58
AT5G20980.2 | Symbols: ATMS3 | ATMS3 (methionine synthase 3); 5-...   204   7e-54
AT5G20980.1 | Symbols: ATMS3 | ATMS3 (methionine synthase 3); 5-...   204   7e-54

>AT5G17920.2 | Symbols: ATCIMS | ATMS1;
           5-methyltetrahydropteroyltriglutamate-homocysteine
           S-methyltransferase/ methionine synthase |
           chr5:5935771-5939195 FORWARD
          Length = 765

 Score =  221 bits (564), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/113 (92%), Positives = 112/113 (99%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIA
Sbjct: 653 FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIA 712

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTELASAK 113
           DR+NKMLAVLE+NILWVNPDCGLKTRKY+EVKPALKNMV AAKL+R++LASAK
Sbjct: 713 DRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765


>AT5G17920.1 | Symbols: ATCIMS, ATMETS, ATMS1 | ATMS1;
           5-methyltetrahydropteroyltriglutamate-homocysteine
           S-methyltransferase/ copper ion binding / methionine
           synthase | chr5:5935771-5939195 FORWARD
          Length = 765

 Score =  221 bits (564), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/113 (92%), Positives = 112/113 (99%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIA
Sbjct: 653 FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIA 712

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTELASAK 113
           DR+NKMLAVLE+NILWVNPDCGLKTRKY+EVKPALKNMV AAKL+R++LASAK
Sbjct: 713 DRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765


>AT3G03780.3 | Symbols: ATMS2 | AtMS2;
           5-methyltetrahydropteroyltriglutamate-homocysteine
           S-methyltransferase/ methionine synthase |
           chr3:957602-960740 FORWARD
          Length = 765

 Score =  218 bits (554), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 103/113 (91%), Positives = 110/113 (97%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPST+EIA
Sbjct: 653 FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIA 712

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTELASAK 113
           DRINKMLAVLE+NILWVNPDCGLKTRKY+EVKPALK MV AAKL+R++L SAK
Sbjct: 713 DRINKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKAMVDAAKLIRSQLGSAK 765


>AT3G03780.2 | Symbols: ATMS2 | AtMS2;
           5-methyltetrahydropteroyltriglutamate-homocysteine
           S-methyltransferase/ methionine synthase |
           chr3:957602-960740 FORWARD
          Length = 765

 Score =  218 bits (554), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 103/113 (91%), Positives = 110/113 (97%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPST+EIA
Sbjct: 653 FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIA 712

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTELASAK 113
           DRINKMLAVLE+NILWVNPDCGLKTRKY+EVKPALK MV AAKL+R++L SAK
Sbjct: 713 DRINKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKAMVDAAKLIRSQLGSAK 765


>AT3G03780.1 | Symbols: ATMS2 | AtMS2;
           5-methyltetrahydropteroyltriglutamate-homocysteine
           S-methyltransferase/ methionine synthase |
           chr3:957602-960740 FORWARD
          Length = 765

 Score =  218 bits (554), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 103/113 (91%), Positives = 110/113 (97%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPST+EIA
Sbjct: 653 FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIA 712

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTELASAK 113
           DRINKMLAVLE+NILWVNPDCGLKTRKY+EVKPALK MV AAKL+R++L SAK
Sbjct: 713 DRINKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKAMVDAAKLIRSQLGSAK 765


>AT5G20980.2 | Symbols: ATMS3 | ATMS3 (methionine synthase 3);
           5-methyltetrahydropteroyltriglutamate-homocysteine
           S-methyltransferase/ methionine synthase |
           chr5:7124397-7128353 REVERSE
          Length = 812

 Score =  204 bits (520), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 103/109 (94%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVF EGVKYGAGIGPGVYDIHSPRIPSTEEIA
Sbjct: 701 FNDIIHSIIDMDADVITIENSRSDEKLLSVFHEGVKYGAGIGPGVYDIHSPRIPSTEEIA 760

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTEL 109
           +RINKMLAVL+  +LWVNPDCGLKTR YSEVK AL NMVAAAKL+R++L
Sbjct: 761 ERINKMLAVLDSKVLWVNPDCGLKTRNYSEVKSALSNMVAAAKLIRSQL 809


>AT5G20980.1 | Symbols: ATMS3 | ATMS3 (methionine synthase 3);
           5-methyltetrahydropteroyltriglutamate-homocysteine
           S-methyltransferase/ methionine synthase |
           chr5:7124397-7128353 REVERSE
          Length = 812

 Score =  204 bits (520), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 103/109 (94%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVF EGVKYGAGIGPGVYDIHSPRIPSTEEIA
Sbjct: 701 FNDIIHSIIDMDADVITIENSRSDEKLLSVFHEGVKYGAGIGPGVYDIHSPRIPSTEEIA 760

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTEL 109
           +RINKMLAVL+  +LWVNPDCGLKTR YSEVK AL NMVAAAKL+R++L
Sbjct: 761 ERINKMLAVLDSKVLWVNPDCGLKTRNYSEVKSALSNMVAAAKLIRSQL 809