Jatropha Genome Database

JcCB0284451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.20 - phase: 0 /partial
         (80 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26932.2 | Symbols: DRB3 | DRB3 (dsRNA-binding protein 3); RN...    70   3e-13
AT3G26932.1 | Symbols: DRB3 | DRB3 (dsRNA-binding protein 3); RN...    70   3e-13
AT2G28380.1 | Symbols: DRB2 | DRB2 (DSRNA-BINDING PROTEIN 2); do...    68   1e-12
AT5G41070.1 | Symbols: DRB5 | DRB5 (DSRNA-BINDING PROTEIN 5); do...    67   3e-12
AT3G62800.2 | Symbols: DRB4 | DRB4 (DOUBLE-STRANDED-RNA-BINDING ...    53   4e-08
AT3G62800.1 | Symbols: DRB4 | DRB4 (DOUBLE-STRANDED-RNA-BINDING ...    53   4e-08
AT3G62800.3 | Symbols:  | DRB4 (DOUBLE-STRANDED-RNA-BINDING PROT...    53   4e-08
AT1G09700.1 | Symbols: HYL1, DRB1 | HYL1 (HYPONASTIC LEAVES 1); ...    47   2e-06

>AT3G26932.2 | Symbols: DRB3 | DRB3 (dsRNA-binding protein 3); RNA
          binding / double-stranded RNA binding |
          chr3:9930460-9931714 REVERSE
          Length = 359

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  ++LPSY  T+EGPDH PRF+ +V  NG  F S +   + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA    S+ G
Sbjct: 61 AEVALSALSSKG 72



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YK  LQE  H+   +LP Y + + GP H P F  TV + G+SF+ +S  ++ K A+ +A
Sbjct: 87  IYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGES-AKTKKQAEKNA 145

Query: 61  AKVAF 65
           A  A+
Sbjct: 146 AIAAW 150


>AT3G26932.1 | Symbols: DRB3 | DRB3 (dsRNA-binding protein 3); RNA
          binding / double-stranded RNA binding |
          chr3:9930460-9931714 REVERSE
          Length = 359

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  ++LPSY  T+EGPDH PRF+ +V  NG  F S +   + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA    S+ G
Sbjct: 61 AEVALSALSSKG 72



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YK  LQE  H+   +LP Y + + GP H P F  TV + G+SF+ +S  ++ K A+ +A
Sbjct: 87  IYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGES-AKTKKQAEKNA 145

Query: 61  AKVAF 65
           A  A+
Sbjct: 146 AIAAW 150


>AT2G28380.1 | Symbols: DRB2 | DRB2 (DSRNA-BINDING PROTEIN 2);
          double-stranded RNA binding | chr2:12134098-12135915
          REVERSE
          Length = 434

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 44/72 (61%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  +NLPSY   +EGPDH PRF+ TV  NG  F S     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA +  S  G
Sbjct: 61 AEVALNALSNRG 72


>AT5G41070.1 | Symbols: DRB5 | DRB5 (DSRNA-BINDING PROTEIN 5);
          double-stranded RNA binding | chr5:16438547-16439916
          FORWARD
          Length = 393

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  +NLPSY   +EGPDH PRF+ +V  NG  F S +   + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61 AKVAFDHFST 70
          A+V+ +  S+
Sbjct: 61 AEVSLNVLSS 70


>AT3G62800.2 | Symbols: DRB4 | DRB4 (DOUBLE-STRANDED-RNA-BINDING
          PROTEIN 4); double-stranded RNA binding / protein
          binding | chr3:23225749-23227163 REVERSE
          Length = 355

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          +YK +LQ    Q    LP Y   +EGP H PRFR  VT  G +F S   F + K A++ A
Sbjct: 4  VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61 AKVAFDHFS 69
          AK+A    +
Sbjct: 64 AKIAVASLT 72


>AT3G62800.1 | Symbols: DRB4 | DRB4 (DOUBLE-STRANDED-RNA-BINDING
          PROTEIN 4); double-stranded RNA binding / protein
          binding | chr3:23225749-23227163 REVERSE
          Length = 355

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          +YK +LQ    Q    LP Y   +EGP H PRFR  VT  G +F S   F + K A++ A
Sbjct: 4  VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61 AKVAFDHFS 69
          AK+A    +
Sbjct: 64 AKIAVASLT 72


>AT3G62800.3 | Symbols:  | DRB4 (DOUBLE-STRANDED-RNA-BINDING
          PROTEIN 4); double-stranded RNA binding / protein
          binding | chr3:23225749-23227163 REVERSE
          Length = 329

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          +YK +LQ    Q    LP Y   +EGP H PRFR  VT  G +F S   F + K A++ A
Sbjct: 4  VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61 AKVAF 65
          AK+A 
Sbjct: 64 AKIAV 68


>AT1G09700.1 | Symbols: HYL1, DRB1 | HYL1 (HYPONASTIC LEAVES 1);
          double-stranded RNA binding / miRNA binding / protein
          binding | chr1:3137960-3140118 REVERSE
          Length = 419

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          ++K++LQE   +     P Y+  KEGP H   F+ TV ++G+ ++S   F + K A+  A
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61 AKVAF 65
          A+VA 
Sbjct: 75 AEVAL 79