Jatropha Genome Database

JcCB0284451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.10 + phase: 2 /pseudo/partial
         (149 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21120.1 | Symbols: AAT1, CAT1 | AAT1 (AMINO ACID TRANSPORTER...    64   3e-11
AT3G10600.1 | Symbols: CAT7 | CAT7 (CATIONIC AMINO ACID TRANSPOR...    50   5e-07
AT5G04770.1 | Symbols: ATCAT6, CAT6 | CAT6 (CATIONIC AMINO ACID ...    50   6e-07
AT2G34960.1 | Symbols: CAT5 | CAT5 (CATIONIC AMINO ACID TRANSPOR...    49   1e-06

>AT4G21120.1 | Symbols: AAT1, CAT1 | AAT1 (AMINO ACID TRANSPORTER
           1); L-glutamate transmembrane transporter/ L-lysine
           transmembrane transporter/ arginine transmembrane
           transporter/ cationic amino acid transmembrane
           transporter | chr4:11270318-11273775 FORWARD
          Length = 594

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 32/48 (66%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P ASI +NIFLLGSID KSF RF IWT          GLHATYD A
Sbjct: 520 WLPSASIAINIFLLGSIDTKSFVRFAIWTGILLIYYVLFGLHATYDTA 567


>AT3G10600.1 | Symbols: CAT7 | CAT7 (CATIONIC AMINO ACID TRANSPORTER
           7); cationic amino acid transmembrane transporter |
           chr3:3313969-3317162 FORWARD
          Length = 584

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 29/47 (61%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDA 120
           W P  SI LNIFLLGS+DA S+ RFG ++           +HA+YDA
Sbjct: 516 WTPCVSIFLNIFLLGSLDAPSYIRFGFFSGLVVLVYVFYSVHASYDA 562


>AT5G04770.1 | Symbols: ATCAT6, CAT6 | CAT6 (CATIONIC AMINO ACID
           TRANSPORTER 6); amino acid transmembrane transporter/
           basic amino acid transmembrane transporter/ cationic
           amino acid transmembrane transporter |
           chr5:1379118-1382304 FORWARD
          Length = 583

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 29/47 (61%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDA 120
           W P  SI LNIFLLGS+DA S+ RFG ++          G+HA+ DA
Sbjct: 517 WTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLIVLVYLFYGVHASSDA 563


>AT2G34960.1 | Symbols: CAT5 | CAT5 (CATIONIC AMINO ACID TRANSPORTER
           5); L-glutamate transmembrane transporter/ L-lysine
           transmembrane transporter/ arginine transmembrane
           transporter/ cationic amino acid transmembrane
           transporter | chr2:14744175-14745884 REVERSE
          Length = 569

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 29/48 (60%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI  NIFL+GS+ A +F RFG+ T          GLHAT+D A
Sbjct: 514 WLPCLSIATNIFLMGSLGAMAFVRFGVCTLAMLLYYFLLGLHATFDMA 561