Jatropha Genome Database

JcCB0283991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0283991.10 + phase: 0 /pseudo/partial
         (275 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20980.3 | Symbols:  | eukaryotic translation initiation fact...   392   e-109
AT4G20980.2 | Symbols:  | eukaryotic translation initiation fact...   392   e-109
AT4G20980.1 | Symbols:  | eukaryotic translation initiation fact...   392   e-109
AT5G44320.1 | Symbols:  | eukaryotic translation initiation fact...   377   e-105

>AT4G20980.3 | Symbols:  | eukaryotic translation initiation factor
           3 subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative | chr4:11216997-11218772 FORWARD
          Length = 591

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 181/205 (88%), Positives = 196/205 (95%)

Query: 32  NFSQQVLIRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVEVN 91
           NFSQQVL+RDG K  FDE NPFANEGEE+ASVAYRYRRWKLDD+M+LVARCE+QSV ++N
Sbjct: 346 NFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHLVARCELQSVADLN 405

Query: 92  KQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLARWTAQALLASADL 151
            QRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNN NKLA+WTAQALLA+AD+
Sbjct: 406 NQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLAKWTAQALLANADM 465

Query: 152 MKLGFVSRVHPRDHYNHVILAVLGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKY 211
           MK+GFVSRVHPRDH+NHVIL+VLGYKP+DFA QINLNTSNMWGIVKSIVDLCMKL+EGKY
Sbjct: 466 MKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQINLNTSNMWGIVKSIVDLCMKLSEGKY 525

Query: 212 VLVKDPSKPQVRIYEVPADAFENDY 236
           VLVKDPSKPQVRIYEVP DAFENDY
Sbjct: 526 VLVKDPSKPQVRIYEVPPDAFENDY 550


>AT4G20980.2 | Symbols:  | eukaryotic translation initiation factor
           3 subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative | chr4:11216997-11218772 FORWARD
          Length = 591

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 181/205 (88%), Positives = 196/205 (95%)

Query: 32  NFSQQVLIRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVEVN 91
           NFSQQVL+RDG K  FDE NPFANEGEE+ASVAYRYRRWKLDD+M+LVARCE+QSV ++N
Sbjct: 346 NFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHLVARCELQSVADLN 405

Query: 92  KQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLARWTAQALLASADL 151
            QRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNN NKLA+WTAQALLA+AD+
Sbjct: 406 NQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLAKWTAQALLANADM 465

Query: 152 MKLGFVSRVHPRDHYNHVILAVLGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKY 211
           MK+GFVSRVHPRDH+NHVIL+VLGYKP+DFA QINLNTSNMWGIVKSIVDLCMKL+EGKY
Sbjct: 466 MKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQINLNTSNMWGIVKSIVDLCMKLSEGKY 525

Query: 212 VLVKDPSKPQVRIYEVPADAFENDY 236
           VLVKDPSKPQVRIYEVP DAFENDY
Sbjct: 526 VLVKDPSKPQVRIYEVPPDAFENDY 550


>AT4G20980.1 | Symbols:  | eukaryotic translation initiation factor
           3 subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative | chr4:11216997-11218772 FORWARD
          Length = 591

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 181/205 (88%), Positives = 196/205 (95%)

Query: 32  NFSQQVLIRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVEVN 91
           NFSQQVL+RDG K  FDE NPFANEGEE+ASVAYRYRRWKLDD+M+LVARCE+QSV ++N
Sbjct: 346 NFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHLVARCELQSVADLN 405

Query: 92  KQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLARWTAQALLASADL 151
            QRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNN NKLA+WTAQALLA+AD+
Sbjct: 406 NQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLAKWTAQALLANADM 465

Query: 152 MKLGFVSRVHPRDHYNHVILAVLGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKY 211
           MK+GFVSRVHPRDH+NHVIL+VLGYKP+DFA QINLNTSNMWGIVKSIVDLCMKL+EGKY
Sbjct: 466 MKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQINLNTSNMWGIVKSIVDLCMKLSEGKY 525

Query: 212 VLVKDPSKPQVRIYEVPADAFENDY 236
           VLVKDPSKPQVRIYEVP DAFENDY
Sbjct: 526 VLVKDPSKPQVRIYEVPPDAFENDY 550


>AT5G44320.1 | Symbols:  | eukaryotic translation initiation factor
           3 subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative | chr5:17854901-17856667 REVERSE
          Length = 588

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 173/205 (84%), Positives = 192/205 (93%)

Query: 32  NFSQQVLIRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVEVN 91
           NF+QQVL+++G +  FDEP P  NEGEE AS+AYRYRRWKLDD MYLVARCE+QS V++N
Sbjct: 341 NFAQQVLVKNGKRETFDEPIPNVNEGEENASIAYRYRRWKLDDSMYLVARCELQSTVDLN 400

Query: 92  KQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLARWTAQALLASADL 151
            QRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLA ELKNN NKLA+WTAQALLA+AD+
Sbjct: 401 NQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLANELKNNGNKLAKWTAQALLANADM 460

Query: 152 MKLGFVSRVHPRDHYNHVILAVLGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKY 211
           MK+GFVSRVHPRDH+NHVIL+VLGYKP+DFA QINLNT+NMWGIVKSIVDLCMKL+EGKY
Sbjct: 461 MKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQINLNTNNMWGIVKSIVDLCMKLSEGKY 520

Query: 212 VLVKDPSKPQVRIYEVPADAFENDY 236
           VLVKDPSKPQVRIYEVPADAF+NDY
Sbjct: 521 VLVKDPSKPQVRIYEVPADAFDNDY 545