Jatropha Genome Database

JcCB0282311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0282311.10 + phase: 0 
         (97 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15350.1 | Symbols:  | plastocyanin-like domain-containing pr...    62   7e-11
AT3G01070.1 | Symbols:  | plastocyanin-like domain-containing pr...    62   9e-11
AT4G12880.1 | Symbols:  | plastocyanin-like domain-containing pr...    61   2e-10

>AT5G15350.1 | Symbols:  | plastocyanin-like domain-containing
          protein | chr5:4985184-4986154 REVERSE
          Length = 172

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 14 MMVPVAVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLCKFSFLTI 73
          ++  V +  LM   +P V+A ++TVG N  W  N+NYTIWAQ KHFY GDWL    F+  
Sbjct: 7  LITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLY---FVFD 63

Query: 74 FLLHNVLK 81
             HN+L+
Sbjct: 64 RNQHNILE 71


>AT3G01070.1 | Symbols:  | plastocyanin-like domain-containing
          protein | chr3:19659-20444 FORWARD
          Length = 167

 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 11 RSSMMVPVAVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWL 65
          R +++V  AV+  ++     V+A RWTVG N  W  N+NYTIWAQDKHFY  DWL
Sbjct: 3  RVAVLVAGAVLAFLL-AATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWL 56


>AT4G12880.1 | Symbols:  | plastocyanin-like domain-containing
          protein | chr4:7544572-7545226 REVERSE
          Length = 141

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 12 SSMMVPVAVVI--LMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLCKFS 69
           SM++  AVV+  L+   +PEV+A ++ VG    W  N+NYT+WAQ KHFY GDWL    
Sbjct: 3  RSMVLISAVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLY--- 59

Query: 70 FLTIFLLHNVLK 81
          F+     HN+L+
Sbjct: 60 FVFYRDQHNILE 71