Jatropha Genome Database

JcCB0281811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0281811.20 + phase: 0 
         (118 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19680.2 | Symbols:  | mitochondrial ATP synthase g subunit f...   163   2e-41
AT2G19680.1 | Symbols:  | mitochondrial ATP synthase g subunit f...   163   2e-41
AT4G29480.1 | Symbols:  | mitochondrial ATP synthase g subunit f...   162   4e-41
AT4G26210.2 | Symbols:  | mitochondrial ATP synthase g subunit f...   154   1e-38
AT4G26210.1 | Symbols:  | mitochondrial ATP synthase g subunit f...   154   1e-38

>AT2G19680.2 | Symbols:  | mitochondrial ATP synthase g subunit
           family protein | chr2:8501865-8502622 FORWARD
          Length = 122

 Score =  163 bits (412), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 95/121 (78%), Gaps = 4/121 (3%)

Query: 1   MASKLPQLQSKLHSA----AKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QLQSK   A    AKHG ++YKQLLE+NKQYIQ P T+E+C  L+ QLL+TRLA
Sbjct: 1   MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP RYE F KE++  KNL+K++  + +E AG+ ALFG+ECFAWF  GEI+GRGFTFTGY
Sbjct: 61  SIPGRYETFRKEVDYAKNLLKNRANLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 117 Y 117
           Y
Sbjct: 121 Y 121


>AT2G19680.1 | Symbols:  | mitochondrial ATP synthase g subunit
           family protein | chr2:8501865-8502622 FORWARD
          Length = 122

 Score =  163 bits (412), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 95/121 (78%), Gaps = 4/121 (3%)

Query: 1   MASKLPQLQSKLHSA----AKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QLQSK   A    AKHG ++YKQLLE+NKQYIQ P T+E+C  L+ QLL+TRLA
Sbjct: 1   MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP RYE F KE++  KNL+K++  + +E AG+ ALFG+ECFAWF  GEI+GRGFTFTGY
Sbjct: 61  SIPGRYETFRKEVDYAKNLLKNRANLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 117 Y 117
           Y
Sbjct: 121 Y 121


>AT4G29480.1 | Symbols:  | mitochondrial ATP synthase g subunit
           family protein | chr4:14486265-14487257 REVERSE
          Length = 122

 Score =  162 bits (410), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 95/121 (78%), Gaps = 4/121 (3%)

Query: 1   MASKLPQLQSKLHSA----AKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL Q+QSK   A    AKHG ++Y+QLLE+NKQYIQ P TVE+CQ L+ QLL+TRLA
Sbjct: 1   MASKLIQVQSKACEASKFVAKHGTSYYRQLLEKNKQYIQEPATVEKCQELSKQLLYTRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP RYE FWKE++  KNL K++  + +E AG+ ALFG+ECFAW+  GEI GRGFTFTGY
Sbjct: 61  SIPGRYETFWKEVDYAKNLWKNRSGLKVEDAGIAALFGLECFAWYCAGEIAGRGFTFTGY 120

Query: 117 Y 117
           Y
Sbjct: 121 Y 121


>AT4G26210.2 | Symbols:  | mitochondrial ATP synthase g subunit
           family protein | chr4:13282370-13283118 FORWARD
          Length = 122

 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 93/121 (76%), Gaps = 4/121 (3%)

Query: 1   MASKLPQLQSKLHSAAK----HGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QL+SK   A+K    HG  +YKQLL++NK YIQ P T+E+C  L+ QLL+TRLA
Sbjct: 1   MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP R E+FWKE+  +K L K++ ++ +E AG+ ALFG+ECFAW+  GEI+GRGFTFTGY
Sbjct: 61  SIPGRSESFWKEVNHVKGLWKNRADLKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120

Query: 117 Y 117
           Y
Sbjct: 121 Y 121


>AT4G26210.1 | Symbols:  | mitochondrial ATP synthase g subunit
           family protein | chr4:13282370-13283118 FORWARD
          Length = 122

 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 93/121 (76%), Gaps = 4/121 (3%)

Query: 1   MASKLPQLQSKLHSAAK----HGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QL+SK   A+K    HG  +YKQLL++NK YIQ P T+E+C  L+ QLL+TRLA
Sbjct: 1   MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP R E+FWKE+  +K L K++ ++ +E AG+ ALFG+ECFAW+  GEI+GRGFTFTGY
Sbjct: 61  SIPGRSESFWKEVNHVKGLWKNRADLKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120

Query: 117 Y 117
           Y
Sbjct: 121 Y 121