Jatropha Genome Database

JcCB0281811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0281811.10 - phase: 0 /partial
         (287 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44320.1 | Symbols:  | eukaryotic translation initiation fact...   303   8e-83
AT4G20980.3 | Symbols:  | eukaryotic translation initiation fact...   303   1e-82
AT4G20980.2 | Symbols:  | eukaryotic translation initiation fact...   303   1e-82
AT4G20980.1 | Symbols:  | eukaryotic translation initiation fact...   303   1e-82

>AT5G44320.1 | Symbols:  | eukaryotic translation initiation factor
           3 subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative | chr5:17854901-17856667 REVERSE
          Length = 588

 Score =  303 bits (776), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 169/295 (57%), Positives = 187/295 (63%), Gaps = 12/295 (4%)

Query: 4   GFEVGAVPFNPDGWGPPDAX----XXXXXXXLPLHVPFAPFSRSEKLGRIADWTXXXXXX 59
            FEVG VPFN DGWGPPDA            L  +VPFA FSRSEKLGR+ADWT      
Sbjct: 5   AFEVGTVPFNSDGWGPPDASDTSSTSVAAANLLPNVPFASFSRSEKLGRVADWTRALSNP 64

Query: 60  XXXXXXXXXXXSDSVFDFTXXXXX-----XXXXXXXXXXSTFRLVDXXXXXXXXXXXXXX 114
                        ++FDF+                    + FRLVD              
Sbjct: 65  SARPHTGSKSDPSAIFDFSAFAVDEGFGLTNSGGNADEDAAFRLVDGKPPPRPKFGPKWR 124

Query: 115 XNQH--RPQLPQXXXXXXXXXXXXXXXXXXXXXXLYNLNRSNQNQPRREAAAFKSSVDIQ 172
            NQ+  R QLPQ                      LYN NR+N +Q RREAAAFKSSVDIQ
Sbjct: 125 FNQYHNRNQLPQRRDEEVEAKKREAEKDRARRDRLYNNNRNNIHQQRREAAAFKSSVDIQ 184

Query: 173 PEWNMLDQIPFSTFSKLSFSVAEPEDLLLCGGLEFYDRSYDRVTPKNERRLERFKNRNFF 232
           PEWNML+QIPFSTFSKLSF+V+EPEDLLLCGGLE YDRS+DR+TPK +RRLERFKNR+ F
Sbjct: 185 PEWNMLEQIPFSTFSKLSFTVSEPEDLLLCGGLESYDRSFDRITPKADRRLERFKNRS-F 243

Query: 233 KVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 287
           KVTT+DD VIRRLA EDKATVFATD ILA LMCAPRSVYSWD+VIQRVGNKLFFD
Sbjct: 244 KVTTSDDLVIRRLAKEDKATVFATDAILAALMCAPRSVYSWDLVIQRVGNKLFFD 298


>AT4G20980.3 | Symbols:  | eukaryotic translation initiation factor
           3 subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative | chr4:11216997-11218772 FORWARD
          Length = 591

 Score =  303 bits (775), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/299 (56%), Positives = 186/299 (62%), Gaps = 15/299 (5%)

Query: 4   GFEVGAVPFNPDGWGPPDAX--------XXXXXXXLPLHVPFAPFSRSEKLGRIADWTXX 55
            FE  AVPFN DGWGPPDA                L  +VPFA FSRS+KLGR+ADWT  
Sbjct: 5   AFEFVAVPFNSDGWGPPDASDVSSSASPTSVAAANLLPNVPFASFSRSDKLGRVADWTRN 64

Query: 56  XXXXXXXXXXXXXXXSDSVFDFTXXXXXXXXXXXXX-----XXSTFRLVDXXXXXXXXXX 110
                            +VFDF+                    + FRLVD          
Sbjct: 65  LSNPSARPNTGSKSDPSAVFDFSAFAIDEGFGLASSGGNPDEDAAFRLVDGKPPPRPKFG 124

Query: 111 XXXXXNQH--RPQLPQXXXXXXXXXXXXXXXXXXXXXXLYNLNRSNQNQPRREAAAFKSS 168
                N H  R QLPQ                      LYN NR+N +  RREAAAFKSS
Sbjct: 125 PKWRFNPHHNRNQLPQRRDEEVEAKKRDAEKERARRDRLYNNNRNNIHHQRREAAAFKSS 184

Query: 169 VDIQPEWNMLDQIPFSTFSKLSFSVAEPEDLLLCGGLEFYDRSYDRVTPKNERRLERFKN 228
           VDIQPEWNML+QIPFSTFSKLS++V EPEDLLLCGGLE+Y+R +DR+TPKNERRLERFKN
Sbjct: 185 VDIQPEWNMLEQIPFSTFSKLSYTVQEPEDLLLCGGLEYYNRLFDRITPKNERRLERFKN 244

Query: 229 RNFFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 287
           RNFFKVTT+DDPVIRRLA EDKATVFATD ILA LMCAPRSVYSWDIVIQRVGNKLFFD
Sbjct: 245 RNFFKVTTSDDPVIRRLAKEDKATVFATDAILAALMCAPRSVYSWDIVIQRVGNKLFFD 303


>AT4G20980.2 | Symbols:  | eukaryotic translation initiation factor
           3 subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative | chr4:11216997-11218772 FORWARD
          Length = 591

 Score =  303 bits (775), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/299 (56%), Positives = 186/299 (62%), Gaps = 15/299 (5%)

Query: 4   GFEVGAVPFNPDGWGPPDAX--------XXXXXXXLPLHVPFAPFSRSEKLGRIADWTXX 55
            FE  AVPFN DGWGPPDA                L  +VPFA FSRS+KLGR+ADWT  
Sbjct: 5   AFEFVAVPFNSDGWGPPDASDVSSSASPTSVAAANLLPNVPFASFSRSDKLGRVADWTRN 64

Query: 56  XXXXXXXXXXXXXXXSDSVFDFTXXXXXXXXXXXXX-----XXSTFRLVDXXXXXXXXXX 110
                            +VFDF+                    + FRLVD          
Sbjct: 65  LSNPSARPNTGSKSDPSAVFDFSAFAIDEGFGLASSGGNPDEDAAFRLVDGKPPPRPKFG 124

Query: 111 XXXXXNQH--RPQLPQXXXXXXXXXXXXXXXXXXXXXXLYNLNRSNQNQPRREAAAFKSS 168
                N H  R QLPQ                      LYN NR+N +  RREAAAFKSS
Sbjct: 125 PKWRFNPHHNRNQLPQRRDEEVEAKKRDAEKERARRDRLYNNNRNNIHHQRREAAAFKSS 184

Query: 169 VDIQPEWNMLDQIPFSTFSKLSFSVAEPEDLLLCGGLEFYDRSYDRVTPKNERRLERFKN 228
           VDIQPEWNML+QIPFSTFSKLS++V EPEDLLLCGGLE+Y+R +DR+TPKNERRLERFKN
Sbjct: 185 VDIQPEWNMLEQIPFSTFSKLSYTVQEPEDLLLCGGLEYYNRLFDRITPKNERRLERFKN 244

Query: 229 RNFFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 287
           RNFFKVTT+DDPVIRRLA EDKATVFATD ILA LMCAPRSVYSWDIVIQRVGNKLFFD
Sbjct: 245 RNFFKVTTSDDPVIRRLAKEDKATVFATDAILAALMCAPRSVYSWDIVIQRVGNKLFFD 303


>AT4G20980.1 | Symbols:  | eukaryotic translation initiation factor
           3 subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative | chr4:11216997-11218772 FORWARD
          Length = 591

 Score =  303 bits (775), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/299 (56%), Positives = 186/299 (62%), Gaps = 15/299 (5%)

Query: 4   GFEVGAVPFNPDGWGPPDAX--------XXXXXXXLPLHVPFAPFSRSEKLGRIADWTXX 55
            FE  AVPFN DGWGPPDA                L  +VPFA FSRS+KLGR+ADWT  
Sbjct: 5   AFEFVAVPFNSDGWGPPDASDVSSSASPTSVAAANLLPNVPFASFSRSDKLGRVADWTRN 64

Query: 56  XXXXXXXXXXXXXXXSDSVFDFTXXXXXXXXXXXXX-----XXSTFRLVDXXXXXXXXXX 110
                            +VFDF+                    + FRLVD          
Sbjct: 65  LSNPSARPNTGSKSDPSAVFDFSAFAIDEGFGLASSGGNPDEDAAFRLVDGKPPPRPKFG 124

Query: 111 XXXXXNQH--RPQLPQXXXXXXXXXXXXXXXXXXXXXXLYNLNRSNQNQPRREAAAFKSS 168
                N H  R QLPQ                      LYN NR+N +  RREAAAFKSS
Sbjct: 125 PKWRFNPHHNRNQLPQRRDEEVEAKKRDAEKERARRDRLYNNNRNNIHHQRREAAAFKSS 184

Query: 169 VDIQPEWNMLDQIPFSTFSKLSFSVAEPEDLLLCGGLEFYDRSYDRVTPKNERRLERFKN 228
           VDIQPEWNML+QIPFSTFSKLS++V EPEDLLLCGGLE+Y+R +DR+TPKNERRLERFKN
Sbjct: 185 VDIQPEWNMLEQIPFSTFSKLSYTVQEPEDLLLCGGLEYYNRLFDRITPKNERRLERFKN 244

Query: 229 RNFFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 287
           RNFFKVTT+DDPVIRRLA EDKATVFATD ILA LMCAPRSVYSWDIVIQRVGNKLFFD
Sbjct: 245 RNFFKVTTSDDPVIRRLAKEDKATVFATDAILAALMCAPRSVYSWDIVIQRVGNKLFFD 303