Jatropha Genome Database

JcCB0280701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0280701.10 + phase: 0 
         (229 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48840.1 | Symbols: PANC, PTS, ATPTS | PANC (ARABIDOPSIS HOMO...   301   2e-82

>AT5G48840.1 | Symbols: PANC, PTS, ATPTS | PANC (ARABIDOPSIS HOMOLOG
           OF BACTERIAL PANC); pantoate-beta-alanine ligase/
           protein homodimerization | chr5:19803823-19805041
           REVERSE
          Length = 310

 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 143/207 (69%), Positives = 165/207 (79%), Gaps = 6/207 (2%)

Query: 1   MEPEIITDKTQMRNWSRAIRSQGKTIALVPTMGYLHHGHLSLVEEAKKLANVIVVSIYLN 60
           MEPE+I DK  MR WSRA+RSQGKTI LVPTMGYLH GHLSLV ++  L +V VVSIY+N
Sbjct: 1   MEPEVIRDKDSMRKWSRAMRSQGKTIGLVPTMGYLHEGHLSLVRQSLALTDVTVVSIYVN 60

Query: 61  PGQFSPSEDLSTYPSDFNGDIMKLMSVPGGVNAVFHPQNLYDYEIDRKNENYNVNFRDSG 120
           PGQFSP+EDLSTYPSDF+GD+ KL ++ GG   VF+P+NLYDY  + K  N      D G
Sbjct: 61  PGQFSPTEDLSTYPSDFSGDLTKLAALSGGKVVVFNPKNLYDYGGETKKIN------DGG 114

Query: 121 DNCKGVVSCVEEKGLGHETWVRVQRLEKGLCGKSRPVFFRGVATVVTKLFNIVEPDFAVF 180
            N   VVSCVEE GLGHETW+RV+RLEKG CGKSRPVFFRGVAT+VTKLFNIVEPD A+F
Sbjct: 115 GNGGRVVSCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALF 174

Query: 181 GKKDYQQWRIIQRMVRIEIFFLDLLNC 207
           GKKDYQQWRIIQRMVR   F ++++  
Sbjct: 175 GKKDYQQWRIIQRMVRDLNFGIEIVGS 201