Jatropha Genome Database

JcCB0279751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0279751.10 - phase: 0 
         (237 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31010.2 | Symbols:  | RNA binding | chr4:15106708-15108038 F...   197   6e-51
AT4G31010.1 | Symbols:  | RNA binding | chr4:15106708-15108446 F...   197   6e-51
AT5G54890.1 | Symbols:  | RNA binding | chr5:22293346-22294909 F...    89   3e-18
AT2G20020.1 | Symbols: CAF1, ATCAF1 | CAF1; RNA splicing factor,...    67   1e-11
AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor,...    55   3e-08

>AT4G31010.2 | Symbols:  | RNA binding | chr4:15106708-15108038
           FORWARD
          Length = 341

 Score =  197 bits (500), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 124/159 (77%), Gaps = 6/159 (3%)

Query: 32  TSSKLHDHYAFRPPPSLSPQEPDNPN----PTTRKKQKPLYRPPSTLDRTGKKPTHSDLP 87
           +SS+L D Y F+ PP LS    +NP+       +KK KP YRPPS+L+  G K  HSDLP
Sbjct: 27  SSSRLRDLYNFQSPPPLSSSASENPDFNQKNNNKKKPKPQYRPPSSLE--GVKTVHSDLP 84

Query: 88  FDFRYSYTESSQSVRPIGLREPKYSPFGPDRLDRSWTGVCAPAVDPKVKSLDGTDDPNLE 147
           FDFR+SYTES  +VRPIGLREPKYSPFGPDRLDR WTGVCAPAV+PKV+S+DG +DP LE
Sbjct: 85  FDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCAPAVNPKVESVDGVEDPKLE 144

Query: 148 EKRKLMREKIQGDPLTNAERKILVAQCQRNKTKRQINLG 186
           EKR+ +REKIQG  LT AERK LV  CQRNKTKRQ+NLG
Sbjct: 145 EKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLG 183


>AT4G31010.1 | Symbols:  | RNA binding | chr4:15106708-15108446
           FORWARD
          Length = 405

 Score =  197 bits (500), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 130/174 (74%), Gaps = 8/174 (4%)

Query: 32  TSSKLHDHYAFRPPPSLSPQEPDNPN----PTTRKKQKPLYRPPSTLDRTGKKPTHSDLP 87
           +SS+L D Y F+ PP LS    +NP+       +KK KP YRPPS+L+  G K  HSDLP
Sbjct: 27  SSSRLRDLYNFQSPPPLSSSASENPDFNQKNNNKKKPKPQYRPPSSLE--GVKTVHSDLP 84

Query: 88  FDFRYSYTESSQSVRPIGLREPKYSPFGPDRLDRSWTGVCAPAVDPKVKSLDGTDDPNLE 147
           FDFR+SYTES  +VRPIGLREPKYSPFGPDRLDR WTGVCAPAV+PKV+S+DG +DP LE
Sbjct: 85  FDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCAPAVNPKVESVDGVEDPKLE 144

Query: 148 EKRKLMREKIQGDPLTNAERKILVAQCQRNKTKRQINLGMVFVLFNLSILGTVY 201
           EKR+ +REKIQG  LT AERK LV  CQRNKTKRQ+NLG   +  N+  L  VY
Sbjct: 145 EKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNM--LNDVY 196


>AT5G54890.1 | Symbols:  | RNA binding | chr5:22293346-22294909
           FORWARD
          Length = 358

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 12/117 (10%)

Query: 79  KKPTHSDLPFDFRYSYTESSQSVRPIGLREPK-YSPFGPDRLDRSWTGVCAPAVDPKVKS 137
           K P  SDLPFDFRYSY+E++  + PIG REPK +SPFGP RLDR WTG  A A  P++  
Sbjct: 70  KIPVISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALA-SPEIDQ 128

Query: 138 LDGTDDPNLEEKRKLMREKIQGDPLTNAERKILVAQCQRNKTKRQINLGMVFVLFNL 194
               ++          R ++ G+ LT  E   L+ + + +   RQINLG   V  N+
Sbjct: 129 SQWVEE----------RARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNM 175


>AT2G20020.1 | Symbols: CAF1, ATCAF1 | CAF1; RNA splicing factor,
           transesterification mechanism | chr2:8644464-8647090
           FORWARD
          Length = 701

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 46  PSLSPQEPDNPNPTTRKKQKPLYRPPSTLDRTGKKPTHSDLPFDFRYSYTESSQSVRPIG 105
           P   P+ PD+P     K       P   L   G     +  PF+F+YSYTE+ + V+P+ 
Sbjct: 116 PKNKPRVPDSPPQLDAK-------PEVKLSEDGLTYVINGAPFEFKYSYTETPK-VKPLK 167

Query: 106 LREPKYSPFGPDRLDRSWTGVC-APAVDPKVKSLD------------------GTDDPNL 146
           LREP Y+PFGP  + R WTG    P      +  D                  G   P +
Sbjct: 168 LREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGV 227

Query: 147 EEKRKLMREKIQGDPLTNAERKILVAQCQRNKTKRQINLGMVFVLFNL 194
             +    +E+I G+PLT  E + LV  C   KT RQ+N+G   +  N+
Sbjct: 228 GPRYVYSKEEILGEPLTKEEVRELVTSCL--KTTRQLNMGRDGLTHNM 273


>AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor,
           transesterification mechanism | chr1:8312199-8314740
           REVERSE
          Length = 564

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 22/119 (18%)

Query: 87  PFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLDRSWTGVC-----------------AP 129
           PF+F++SY+E+ + V+P+G+REP + PF P  + R WTG                    P
Sbjct: 110 PFEFQFSYSETPK-VKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 168

Query: 130 AVDPKVKSLD--GTDDPNLEEKRKLMREKIQGDPLTNAERKILVAQCQRNKTKRQINLG 186
           A    VK ++  G        K  + RE++ G+PL   E+ +L+     +   RQ+NLG
Sbjct: 169 AGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHD--NRQVNLG 225