Jatropha Genome Database

JcCB0272031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0272031.20 - phase: 0 /pseudo/partial
         (70 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13410.1 | Symbols:  | immunophilin / FKBP-type peptidyl-prol...   112   4e-26

>AT5G13410.1 | Symbols:  | immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein |
           chr5:4299830-4301706 REVERSE
          Length = 256

 Score =  112 bits (280), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/57 (89%), Positives = 56/57 (98%)

Query: 14  RIVVPPELGYPENDFNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIMPN 70
           RI+VPPELGYP+ND+NKSGPRP TFSGQRALDFVLRNQGLIDKTLLFD+ELLKI+PN
Sbjct: 200 RIIVPPELGYPDNDYNKSGPRPMTFSGQRALDFVLRNQGLIDKTLLFDVELLKIVPN 256