Jatropha Genome Database

JcCB0269501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269501.10 + phase: 0 /partial
         (213 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31010.1 | Symbols:  | RNA binding | chr4:15106708-15108446 F...   307   4e-84
AT5G54890.1 | Symbols:  | RNA binding | chr5:22293346-22294909 F...   219   1e-57
AT2G20020.1 | Symbols: CAF1, ATCAF1 | CAF1; RNA splicing factor,...   201   3e-52
AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor,...   197   5e-51
AT4G31010.2 | Symbols:  | RNA binding | chr4:15106708-15108038 F...   181   2e-46

>AT4G31010.1 | Symbols:  | RNA binding | chr4:15106708-15108446
           FORWARD
          Length = 405

 Score =  307 bits (786), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 141/177 (79%), Positives = 163/177 (92%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           KHAEAVR+KCLGVPT+DMKNV   LEDKTFG+++ +H G+LVLYRGRNY+PKKRP IPLM
Sbjct: 200 KHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLM 259

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
           +W+PHEP+YPRLIKTTIDGLSIDETK MRK+GLAVPALTKLAKNGYY SLVPMVRDAFL 
Sbjct: 260 LWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLV 319

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYKPPEDGELFA 177
           +ELVRIDC GLE+ DYKKIG KLRDLVPCILVTF+KEQ+V+WRGKDYKPP++ + ++
Sbjct: 320 SELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPPKEDDEYS 376


>AT5G54890.1 | Symbols:  | RNA binding | chr5:22293346-22294909
           FORWARD
          Length = 358

 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 129/165 (78%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           K AEAVRIKCLGVPT+DM N+C  LE+K+ GKI++R+   LVLYRGRNY+PK RP+IPLM
Sbjct: 184 KKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPLM 243

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
           +W+PH PIYPRL+K   DGL  +ETKEMR RGL  PAL KL +NG Y ++V  VR+ F T
Sbjct: 244 LWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFET 303

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 165
            E+VR+DC  +  SD K+IG KL+++VPC+ + F+ EQI++WRGK
Sbjct: 304 EEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348


>AT2G20020.1 | Symbols: CAF1, ATCAF1 | CAF1; RNA splicing factor,
           transesterification mechanism | chr2:8644464-8647090
           FORWARD
          Length = 701

 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/185 (51%), Positives = 129/185 (69%), Gaps = 5/185 (2%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           K     +IKC GV TVDM NVC QLE+K  GK+I+R  G L L+RGRNYN + RP  PLM
Sbjct: 282 KRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLM 341

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
           +W+P  P+YPRLI+   +GL+  E   MR++G  +  + KL KNG Y  LV  V++AF  
Sbjct: 342 LWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEV 401

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYK-----PPEDGEL 175
            ELVRIDCQG++ SD++KIG KL+DLVPC+LV+FE EQI++WRG+++K     P + G++
Sbjct: 402 CELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGDI 461

Query: 176 FADRE 180
             D E
Sbjct: 462 LEDIE 466


>AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor,
           transesterification mechanism | chr1:8312199-8314740
           REVERSE
          Length = 564

 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 125/168 (74%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           K     +++C GVPTVDM NVC  LE+KT G+IIHR  G + L+RGRNYN + RP  PLM
Sbjct: 242 KRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLM 301

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
           +W+P  P+YP+LI+   +GL+ +E  E R +G ++  + KL+KNG Y SLV  VRDAF  
Sbjct: 302 LWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFEL 361

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYK 168
           + LV++DC GLE SDYKKIG KL++LVPC+L++F+ EQI++WRG+++K
Sbjct: 362 SSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWK 409


>AT4G31010.2 | Symbols:  | RNA binding | chr4:15106708-15108038
           FORWARD
          Length = 341

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 98/110 (89%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           KHAEAVR+KCLGVPT+DMKNV   LEDKTFG+++ +H G+LVLYRGRNY+PKKRP IPLM
Sbjct: 200 KHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLM 259

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASL 110
           +W+PHEP+YPRLIKTTIDGLSIDETK MRK+GLAVPALTKL    ++A L
Sbjct: 260 LWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLGPYLFHAFL 309