Jatropha Genome Database

JcCB0269491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269491.10 - phase: 0 /pseudo/partial
         (452 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21860.1 | Symbols:  | violaxanthin de-epoxidase-related | ch...    97   3e-20

>AT2G21860.1 | Symbols:  | violaxanthin de-epoxidase-related |
           chr2:9318333-9319990 REVERSE
          Length = 522

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 23/194 (11%)

Query: 30  PANHRR--YPAPMQLSFPFRAKTVNRQETNIPAVLETASVATENQSDSPVRIVALVGKGS 87
           P N  R  +P+  + SF  R +T       +  VLET       + + PV+++ALVGKG 
Sbjct: 29  PVNFIRKFHPSLDEASFSRRGRTT------VVRVLETEKSTKIEKPEPPVKLIALVGKGE 82

Query: 88  ISPLKCATWEEVMLHTAKRLKWVDEGYDMLVFTDNLCXXXXXXXXXAKGIEPCRYITDSC 147
           +SPLK  +WEEVMLHTA+RLKWVDEGY+MLVF D +                      + 
Sbjct: 83  VSPLKSTSWEEVMLHTARRLKWVDEGYEMLVFDDEIVSSNDQR---------------AM 127

Query: 148 HFKSRISQVDPIQXQKCSKHNLLRLISESCKQTRRILHFRMKLMGLYLEKIIGVSRSKKI 207
           +    ++Q D +     +    +  I  + K  + ++ F      +       V    K 
Sbjct: 128 NLTQELNQTDILVVVAVNNSESVNWIQTNSKNVKNMICFESSPNLMNRLGGTDVGSVNKD 187

Query: 208 KESMEVVKTVWEAW 221
           KE  EVVKTV +AW
Sbjct: 188 KEVTEVVKTVGDAW 201