Jatropha Genome Database

JcCB0265081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0265081.10 + phase: 2 /partial
         (231 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49530.1 | Symbols:  | SIN-like family protein | chr5:2010093...   154   4e-38

>AT5G49530.1 | Symbols:  | SIN-like family protein |
           chr5:20100934-20104242 FORWARD
          Length = 689

 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/233 (41%), Positives = 142/233 (60%), Gaps = 14/233 (6%)

Query: 2   LLSLPLEERMKKLLIEGPPVQRFSVLKHFAPEDTVEDVLTVVQKHGQLVQGLWAPRTALL 61
           LLSLPL+ER++KLL EG P+ R+SVLKH+APE + ED L  +Q++G+LVQGLW P+T LL
Sbjct: 335 LLSLPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKTRLL 394

Query: 62  FPDSKEVYKPPARDYILLLFSKSLVISTSQITSLPARLKEPVRAFLNLFAVERPSFRDWK 121
             D        ARDY+L LFS++  I  S++ +   ++K  +   L  FA ER   +DWK
Sbjct: 395 KLDGP---VEAARDYVLSLFSQNTTIKYSEVEATGDKMKPLMERMLTEFAKERHVLKDWK 451

Query: 122 FKESPDAAFMKLHPEVVKKQVVIWEGVEKKLTGFLSSSSKGGK-QNDKRQPTLAHNLTKE 180
           FKE  D +F+K +PE+VK+Q + W    + L   +  +++GGK + DKR+  +  + +  
Sbjct: 452 FKEPTDVSFIKSYPEIVKEQDIFWTDKRENLKSRI--TAQGGKSRADKRRNVVGTSSSVT 509

Query: 181 LDPH-------KIAPKSASVNRVPIRTTITSESREALLKVLPKVLQTHKVCRY 226
           + P        K      +++RV +   +  E ++AL K L KV QTHKVCRY
Sbjct: 510 VKPEVPTTLSDKGGSSKNTIHRV-VTQEMPEELKKALPKALKKVFQTHKVCRY 561