Jatropha Genome Database

JcCB0263761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0263761.10 - phase: 0 /partial
         (256 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01880.1 | Symbols:  | DNA repair protein, putative | chr1:30...   348   1e-96
AT3G48900.2 | Symbols:  | DNA binding / catalytic/ chromatin bin...   112   3e-25
AT3G28030.1 | Symbols: UVH3, UVR1 | UVH3 (ULTRAVIOLET HYPERSENSI...    88   6e-18
AT3G48900.1 | Symbols:  | DNA binding / catalytic/ chromatin bin...    85   5e-17
AT5G26680.2 | Symbols:  | endonuclease, putative | chr5:9311882-...    59   3e-09
AT5G26680.1 | Symbols:  | endonuclease, putative | chr5:9311882-...    59   4e-09

>AT1G01880.1 | Symbols:  | DNA repair protein, putative |
           chr1:306558-308991 REVERSE
          Length = 570

 Score =  348 bits (894), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/240 (70%), Positives = 193/240 (80%)

Query: 1   MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIKSYVRKPHVRLTFFRTI 60
           MGVGG FWDLL+PYA+ QG DFLR+KRVAVDLS+WIVQHETA+K +V KPH+RLTFFRTI
Sbjct: 1   MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI 60

Query: 61  NLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGVSVERNRVFSKXX 120
           NLFSKFGA+PVFVVDG PSPLK            GID  +LPV ++GVSVERN++FS+  
Sbjct: 61  NLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWV 120

Query: 121 XXXXXXXXXFGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIKCIRPNT 180
                     G+PVL ANGEAEALCAQLN +G VDACIT DSDAFLFGA CVIK I+PN+
Sbjct: 121 RECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPNS 180

Query: 181 KEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQTFSEDEIL 240
           +EPFECY MS IE+GLGLKRKHLIAISLLVGND+D  GV GIGVD ALR V+ FSED++L
Sbjct: 181 REPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDQVL 240


>AT3G48900.2 | Symbols:  | DNA binding / catalytic/ chromatin
           binding / nuclease | chr3:18131854-18136239 FORWARD
          Length = 600

 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 120/249 (48%), Gaps = 7/249 (2%)

Query: 1   MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIKSY-VRKPHVRLT-FFR 58
           MGV    WD+L+P  +    D L++KRV VDLS W+V+     KSY   K  V L  FF 
Sbjct: 1   MGVK-YLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFH 59

Query: 59  TINLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGVSVERN--RVF 116
            +          + V DG    +K             I    +  ++E  S++RN    F
Sbjct: 60  RLRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKE-TSLKRNMGSEF 118

Query: 117 SKXXXXXXXXXXXFGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIKCI 176
           S             G+  L    EAEA CA LN E L DAC + DSD FLFGA+ V + I
Sbjct: 119 SCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREI 178

Query: 177 RPNTKEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQTFSE 236
                    CY+M DI+  LGL R  LIA++LL+G+D+   GV+G+  + A   V++  +
Sbjct: 179 CLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYS-QGVRGLRQEKACELVRSIGD 237

Query: 237 DEILNGFAS 245
           + IL   AS
Sbjct: 238 NVILEKVAS 246


>AT3G28030.1 | Symbols: UVH3, UVR1 | UVH3 (ULTRAVIOLET HYPERSENSITIVE
            3); DNA binding / catalytic/ endonuclease/ nuclease/
            single-stranded DNA binding | chr3:10424321-10431178
            FORWARD
          Length = 1479

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 96   IDVSSLPVAEEGVSVERN--RVFSKXXXXXXXXXXXFGMPVLTANGEAEALCAQLNREGL 153
            +D   + + +E   +ERN   V S+           FG+P + A  EAEA CA + +  L
Sbjct: 900  LDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNL 959

Query: 154  VDACITADSDAFLFGAECVIKCIRPNTKEPFECYQMSDIEAGLGLKRKHLIAISLLVGND 213
            VD  +T DSD FLFGA  V K I  + K   E Y M DIE  LGL R  +I +++L+G+D
Sbjct: 960  VDGIVTDDSDVFLFGARSVYKNIFDDRK-YVETYFMKDIEKELGLSRDKIIRMAMLLGSD 1018

Query: 214  HDLSGVQGIGVDTALRFVQTFSEDEILNGFASY 246
            +   G+ GIG+  A+  V  F E++ L  F  +
Sbjct: 1019 Y-TEGISGIGIVNAIEVVTAFPEEDGLQKFREW 1050



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 1  MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIK----SYVRKPHVRLTF 56
          MGV G  W+LL P  R    + L +KR+A+D S W+VQ   A++      V+  H+ + F
Sbjct: 1  MGVQG-LWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHL-IGF 58

Query: 57 FRTINLFSKFGAFPVFVVDGIPSPLK 82
          FR I         P+FV DG    LK
Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALK 84


>AT3G48900.1 | Symbols:  | DNA binding / catalytic/ chromatin
           binding / nuclease | chr3:18132449-18136239 FORWARD
          Length = 536

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 103 VAEEGV------SVERN--RVFSKXXXXXXXXXXXFGMPVLTANGEAEALCAQLNREGLV 154
           +A++GV      S++RN    FS             G+  L    EAEA CA LN E L 
Sbjct: 33  IADDGVEPSKETSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLC 92

Query: 155 DACITADSDAFLFGAECVIKCIRPNTKEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDH 214
           DAC + DSD FLFGA+ V + I         CY+M DI+  LGL R  LIA++LL+G+D+
Sbjct: 93  DACFSFDSDIFLFGAKTVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDY 152

Query: 215 DLSGVQGIGVDTALRFVQTFSEDEILNGFAS 245
              GV+G+  + A   V++  ++ IL   AS
Sbjct: 153 S-QGVRGLRQEKACELVRSIGDNVILEKVAS 182


>AT5G26680.2 | Symbols:  | endonuclease, putative |
           chr5:9311882-9315458 REVERSE
          Length = 383

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 13/200 (6%)

Query: 51  HVRLTFFRTINLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGVSV 110
           H++  F RTI L  + G  PV+V DG P  LK                + L  A E  + 
Sbjct: 64  HLQGMFNRTIRLL-EAGIKPVYVFDGKPPELKRQELAKRYSKRADA-TADLTGAIEAGNK 121

Query: 111 ERNRVFSKXXXXXXXXXXX--------FGMPVLTANGEAEALCAQLNREGLVDACITADS 162
           E    +SK                    G+PV+ A  EAEA CA L + G V    + D 
Sbjct: 122 EDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDM 181

Query: 163 DAFLFGAECVIK-CIRPNTKE-PFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQ 220
           D+  FGA   ++  + P++++ P   ++++ I   L L     I + +L G D+    ++
Sbjct: 182 DSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY-CDSIR 240

Query: 221 GIGVDTALRFVQTFSEDEIL 240
           GIG  TAL+ ++     E +
Sbjct: 241 GIGGQTALKLIRQHGSIETI 260


>AT5G26680.1 | Symbols:  | endonuclease, putative |
           chr5:9311882-9315458 REVERSE
          Length = 453

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 13/200 (6%)

Query: 51  HVRLTFFRTINLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGVSV 110
           H++  F RTI L  + G  PV+V DG P  LK                + L  A E  + 
Sbjct: 64  HLQGMFNRTIRLL-EAGIKPVYVFDGKPPELKRQELAKRYSKRADA-TADLTGAIEAGNK 121

Query: 111 ERNRVFSKXXXXXXXXXX--------XFGMPVLTANGEAEALCAQLNREGLVDACITADS 162
           E    +SK                    G+PV+ A  EAEA CA L + G V    + D 
Sbjct: 122 EDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDM 181

Query: 163 DAFLFGAECVIK-CIRPNTKE-PFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQ 220
           D+  FGA   ++  + P++++ P   ++++ I   L L     I + +L G D+    ++
Sbjct: 182 DSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY-CDSIR 240

Query: 221 GIGVDTALRFVQTFSEDEIL 240
           GIG  TAL+ ++     E +
Sbjct: 241 GIGGQTALKLIRQHGSIETI 260