Jatropha Genome Database

JcCB0259591.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0259591.20 - phase: 0 
         (445 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74470.1 | Symbols:  | geranylgeranyl reductase | chr1:279912...   531   e-151

>AT1G74470.1 | Symbols:  | geranylgeranyl reductase |
           chr1:27991248-27992845 FORWARD
          Length = 467

 Score =  531 bits (1368), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/442 (59%), Positives = 318/442 (71%), Gaps = 9/442 (2%)

Query: 11  PTFLCPLNTRTNSKRRNVTIVSSLSGRKLRXXXXXXXXXXXXXXXXXXXXXIETFLFERS 70
           P+ L     RT+ +         LS RKLR                     IET L ER 
Sbjct: 28  PSSLSLPQRRTSLRVTAARATPKLSNRKLRVAVIGGGPAGGAAAETLAQGGIETILIERK 87

Query: 71  TSTAKPCGGAIPLCMIDEFSIPLHLIDRHVTRMKIISPSNLTVDFGSKTLKPHESIPMLR 130
               KPCGGAIPLCM+ EF++PL +IDR VT+MK+ISPSN+ VD G +TLK HE I M+R
Sbjct: 88  MDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIG-RTLKEHEYIGMVR 146

Query: 131 REVLDSFLRSRAQSNGAQLIPALVTHLEVPSSSTEPYIIHHT-------INNTKQTLAVD 183
           REVLD++LR RA+ +GA +I  L   ++ P +   PY +H+T          TK+T+ VD
Sbjct: 147 REVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYDGKTGATGTKKTMEVD 206

Query: 184 VIIGADGANSKVAKSINAGNYTCAIAFQERIRLPDEKMEYYQNLAEMYVGDDVSPDFYAW 243
            +IGADGANS+VAKSI+AG+Y  AIAFQERIR+PDEKM YY++LAEMYVGDDVSPDFY W
Sbjct: 207 AVIGADGANSRVAKSIDAGDYDYAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGW 266

Query: 244 VFPKCDHVAVGTGTVCAKPDIKLYQKGIRERVRQKINGGKVIKVEAHPIPEHPRPVRVRG 303
           VFPKCDHVAVGTGTV  K DIK +Q   R R + KI GGK+I+VEAHPIPEHPRP R+  
Sbjct: 267 VFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSK 326

Query: 304 RVALVGDAAGYVTKCSGEGIYFAAKSGRMCGEAIVKASEGGEKRVKEEDLKRGYLKEWDK 363
           RVALVGDAAGYVTKCSGEGIYFAAKSGRMC EAIV+ S+ G+K + E DL++ YL++WDK
Sbjct: 327 RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRK-YLEKWDK 385

Query: 364 KYYSTFRFLDLLQRVFYGSNMAREALVELCGDEYVQRMTFDSYLYKKLANGDRWEDVKMG 423
            Y  T+R LD+LQ+VFY SN AREA VE+C DEYVQ+MTFDSYLYK++A G   ED+K+ 
Sbjct: 386 TYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLA 445

Query: 424 LNTIGSLVRCRILGREMEALKV 445
           +NTIGSLVR   L RE+E L V
Sbjct: 446 VNTIGSLVRANALRREIEKLSV 467