Jatropha Genome Database

JcCB0257561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0257561.10 - phase: 0 
         (163 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07480.1 | Symbols:  | electron carrier/ iron-sulfur cluster ...   229   4e-61

>AT3G07480.1 | Symbols:  | electron carrier/ iron-sulfur cluster
           binding | chr3:2389026-2389505 FORWARD
          Length = 159

 Score =  229 bits (585), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 133/160 (83%), Gaps = 3/160 (1%)

Query: 4   STLQRLSSQFHRLPSFSPLTKSILVRXXXXXXXXXXXXXXKVADRIVKLFAVDLDGQKRE 63
           +TLQ+LSSQ HRL   SP T+S++VR              KV+DRIVKL A+D DG K++
Sbjct: 3   TTLQKLSSQIHRL---SPFTRSLIVRTSATSAPSPSLGSKKVSDRIVKLSAIDPDGYKQD 59

Query: 64  VVGLSGQTLLRALANCGLIDPASHRLEEIDACSAECEVSIAQEWLEKLPPRSYDEEYVLK 123
           ++GLSGQTLLRAL + GLIDPASHRL++I+ACSAECEV IA+EWLEKLPPR+YDEEYVLK
Sbjct: 60  IIGLSGQTLLRALTHTGLIDPASHRLDDIEACSAECEVQIAEEWLEKLPPRTYDEEYVLK 119

Query: 124 RNSRARVLNKHARLGCQVVLTPDLKGMVVAIPEPKPWDIP 163
           R+SR+R+LNKH+RLGCQVVLT +L+GMVVA+PE KPWDIP
Sbjct: 120 RSSRSRILNKHSRLGCQVVLTQELQGMVVAVPEAKPWDIP 159