Jatropha Genome Database

JcCB0256761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0256761.10 - phase: 0 /partial
         (100 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20170.1 | Symbols:  | unknown protein | chr5:6807554-6810729...   119   5e-28

>AT5G20170.1 | Symbols:  | unknown protein | chr5:6807554-6810729
           REVERSE
          Length = 653

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 72/100 (72%), Gaps = 2/100 (2%)

Query: 1   MDGKIEISIDKLPVKRLEAIDENGAERFPTDVGYDEKRVSLIRRIDFAWAVXXXXXXXXX 60
           MD  +EIS+D+LP+KRLE+I+ENGAERFP+DV YD+KRVSLIRRIDFAWA+         
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWAL--EEEDELK 58

Query: 61  XXXXXXXXXXXTTPWPWQSMVENLQLAHQELSIIIDLINT 100
                         W W+ MVENLQLAHQEL++IIDLI+T
Sbjct: 59  KKKQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDT 98