Jatropha Genome Database

JcCB0254931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0254931.10 - phase: 0 
         (77 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34160.1 | Symbols:  | nucleic acid binding | chr2:14426283-1...    77   2e-15
AT1G29250.1 | Symbols:  | nucleic acid binding | chr1:10223461-1...    77   2e-15
AT3G04620.1 | Symbols:  | nucleic acid binding | chr3:1255660-12...    69   6e-13

>AT2G34160.1 | Symbols:  | nucleic acid binding |
           chr2:14426283-14427220 FORWARD
          Length = 130

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNG A+EKKIMTSTVD++D+ARGRPVQKAKIEI L K+E F
Sbjct: 66  EILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKF 110


>AT1G29250.1 | Symbols:  | nucleic acid binding |
           chr1:10223461-10224592 REVERSE
          Length = 130

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 41/45 (91%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNG A+EKKIMTSTVD++D++RGRPVQKAKIEI L K+E F
Sbjct: 66  EILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKF 110


>AT3G04620.1 | Symbols:  | nucleic acid binding |
           chr3:1255660-1256739 REVERSE
          Length = 164

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 40/45 (88%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNGLA EKK++TSTV M+DE +G+ VQKAKIEI+LGK++ F
Sbjct: 83  EILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKF 127