Jatropha Genome Database

JcCB0252341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0252341.30 + phase: 0 /pseudo
         (204 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31220.1 | Symbols:  | phosphoribosylglycinamide formyltransf...   115   3e-26

>AT1G31220.1 | Symbols:  | phosphoribosylglycinamide
           formyltransferase | chr1:11157064-11158408 FORWARD
          Length = 292

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 74/105 (70%), Gaps = 4/105 (3%)

Query: 92  KRKKLAVFVSGGGSNFKSVHEACIQGSVHGDVVAVVTNRKGCGGAEYARNKEIPVVLFPR 151
           +RKKLAVFVSGGGSNF+ +HE C  GSV+GDVV +VTN+K CGGAEYAR+  IPV++FP+
Sbjct: 76  RRKKLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNKKDCGGAEYARSNGIPVLVFPK 135

Query: 152 TKDEP-DGLSPRDLVAALRFGXFLFVFLNFELKFCSSFNNEMVHA 195
            K EP DGLSP +LV  LR     FV L   LK       E+V A
Sbjct: 136 AKREPSDGLSPSELVDVLRKYGVDFVLLAGYLKLIPV---ELVQA 177