Jatropha Genome Database

JcCB0252341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0252341.10 + phase: 1 /partial
         (100 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59240.1 | Symbols:  | 40S ribosomal protein S8 (RPS8B) | chr...   120   2e-28
AT5G20290.1 | Symbols:  | 40S ribosomal protein S8 (RPS8A) | chr...   111   1e-25

>AT5G59240.1 | Symbols:  | 40S ribosomal protein S8 (RPS8B) |
           chr5:23902626-23903670 REVERSE
          Length = 210

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 71/79 (89%)

Query: 22  ATEEVKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYILEGKE 81
            TEEVKKSNHV RKLE RQ+ R LD H+EEQF+ GRL+ACI+SRPGQCGRADGYILEGKE
Sbjct: 132 TTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKE 191

Query: 82  LEFYMKKIQRKKGKGAGAA 100
           LEFYMKK+Q+KKGK AGAA
Sbjct: 192 LEFYMKKLQKKKGKNAGAA 210


>AT5G20290.1 | Symbols:  | 40S ribosomal protein S8 (RPS8A) |
           chr5:6851695-6853012 REVERSE
          Length = 222

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 54/60 (90%)

Query: 27  KKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYILEGKELEFYM 86
           KKSNH+LRK+  RQ+ R LD HIE+QFA GRL+ACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 151 KKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYM 210