Jatropha Genome Database

JcCB0250351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0250351.10 + phase: 0 
         (126 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40460.1 | Symbols:  | unknown protein | chr5:16202465-162028...    50   4e-07
AT1G60783.1 | Symbols:  | unknown protein | chr1:22375173-223754...    49   1e-06
AT1G10690.1 | Symbols:  | unknown protein | chr1:3550236-3550568...    46   6e-06
AT3G20898.1 | Symbols:  | unknown protein | chr3:7323796-7324203...    46   7e-06

>AT5G40460.1 | Symbols:  | unknown protein | chr5:16202465-16202803
           FORWARD
          Length = 112

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 7/54 (12%)

Query: 54  TTPTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPV-LDVMF 106
           TTPTAKE KIP+++ CPPAP+KR+ +L    N        +EFF  P  L+ +F
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSN------VVREFFTPPSDLETVF 108


>AT1G60783.1 | Symbols:  | unknown protein | chr1:22375173-22375493
           FORWARD
          Length = 106

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 7/53 (13%)

Query: 54  TTPTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPVLDVMF 106
           TTPTA   +IP V+ CPPAPKKRK +L V           +EFF  P L+ +F
Sbjct: 56  TTPTADSVRIPTVIPCPPAPKKRKLTLKVS-------YGPREFFSPPDLETVF 101


>AT1G10690.1 | Symbols:  | unknown protein | chr1:3550236-3550568
           REVERSE
          Length = 110

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 45  TETTTNLDC-TTPTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPVLD 103
           TET     C TTPTA   +IP V  CP APKKRK SL       + V  T+++F  P L+
Sbjct: 47  TETEEQDQCPTTPTAVSVRIPRVPPCPAAPKKRKPSLKC-----SYVTVTRDYFSPPDLE 101

Query: 104 VMF 106
            +F
Sbjct: 102 TVF 104


>AT3G20898.1 | Symbols:  | unknown protein | chr3:7323796-7324203
           FORWARD
          Length = 108

 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 9/61 (14%)

Query: 48  TTNLDCTTPTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKE--FFDSPVLDVM 105
           T+   C TP AK+++IP+++TCPPAPKK++ S        N V+  ++  FF  P +++ 
Sbjct: 49  TSPGGCCTPKAKKSRIPEMLTCPPAPKKQRVS-------KNCVLRRRQIVFFAPPEIELF 101

Query: 106 F 106
           F
Sbjct: 102 F 102