Jatropha Genome Database

JcCB0249431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0249431.10 + phase: 0 /partial
         (196 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28190.1 | Symbols: CSD2, CZSOD2 | CSD2 (COPPER/ZINC SUPEROXI...   219   9e-58
AT1G08830.2 | Symbols: CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE DISMU...   154   3e-38
AT1G08830.1 | Symbols: CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE DISMU...   154   3e-38
AT5G18100.1 | Symbols: CSD3 | CSD3 (copper/zinc superoxide dismu...   145   2e-35
AT5G18100.2 | Symbols: CSD3 | CSD3 (copper/zinc superoxide dismu...   144   3e-35
AT1G12520.1 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1)...    61   5e-10
AT1G12520.3 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1)...    60   8e-10
AT1G12520.2 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1)...    60   1e-09

>AT2G28190.1 | Symbols: CSD2, CZSOD2 | CSD2 (COPPER/ZINC SUPEROXIDE
           DISMUTASE 2); superoxide dismutase |
           chr2:12014548-12016303 FORWARD
          Length = 216

 Score =  219 bits (558), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/119 (88%), Positives = 112/119 (94%)

Query: 76  GTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKT 135
           GTS+VEGVVTLTQ+D GPTTVNVR+TGLTPGPHGFHLHE+GDTTNGCISTG HFNPNN T
Sbjct: 73  GTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMT 132

Query: 136 HGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           HGAPEDE RHAGDLGNI ANADGVAE TIVDNQIPL+GPN+VVGRA VVHEL+DDLGKG
Sbjct: 133 HGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKG 191


>AT1G08830.2 | Symbols: CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE
           DISMUTASE 1); superoxide dismutase |
           chr1:2827700-2829053 FORWARD
          Length = 152

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 88/118 (74%)

Query: 77  TSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTH 136
           +  V G +  TQE DG TTV+  V+GL PG HGFH+H  GDTTNGC+STG HFNP+ KTH
Sbjct: 11  SEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTH 70

Query: 137 GAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           GAPED  RHAGDLGNI    DG A  TI D QIPL+GPN++VGRA+VVH   DDLGKG
Sbjct: 71  GAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKG 128


>AT1G08830.1 | Symbols: CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE
           DISMUTASE 1); superoxide dismutase |
           chr1:2827700-2829053 FORWARD
          Length = 152

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 88/118 (74%)

Query: 77  TSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTH 136
           +  V G +  TQE DG TTV+  V+GL PG HGFH+H  GDTTNGC+STG HFNP+ KTH
Sbjct: 11  SEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTH 70

Query: 137 GAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           GAPED  RHAGDLGNI    DG A  TI D QIPL+GPN++VGRA+VVH   DDLGKG
Sbjct: 71  GAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKG 128


>AT5G18100.1 | Symbols: CSD3 | CSD3 (copper/zinc superoxide
           dismutase 3); superoxide dismutase |
           chr5:5987221-5988706 FORWARD
          Length = 164

 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%)

Query: 76  GTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKT 135
           G +NV G +   Q+  G T V  +++GL+PG HGFH+H +GDTTNGCISTG HFNP N+ 
Sbjct: 16  GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRV 75

Query: 136 HGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           HG P +E RHAGDLGNI+A ++GVAE  I D  IPLSG  +++GRA+VVH   DDLGKG
Sbjct: 76  HGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKG 134


>AT5G18100.2 | Symbols: CSD3 | CSD3 (copper/zinc superoxide
           dismutase 3); superoxide dismutase |
           chr5:5987221-5988436 FORWARD
          Length = 137

 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%)

Query: 76  GTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKT 135
           G +NV G +   Q+  G T V  +++GL+PG HGFH+H +GDTTNGCISTG HFNP N+ 
Sbjct: 16  GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRV 75

Query: 136 HGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           HG P +E RHAGDLGNI+A ++GVAE  I D  IPLSG  +++GRA+VVH   DDLGKG
Sbjct: 76  HGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKG 134


>AT1G12520.1 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1);
           superoxide dismutase/ superoxide dismutase copper
           chaperone | chr1:4267277-4268900 REVERSE
          Length = 320

 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 79  NVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNP-NNKTHG 137
           ++ GVV   Q       +    TGL+PG H + ++EYGD TNG  STG+ +NP  ++T  
Sbjct: 172 DIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT 231

Query: 138 APEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDD 190
            P       GDLG + A+ +G A  +    ++ ++    ++GRA+VV++ +D+
Sbjct: 232 EP------LGDLGTLEADKNGEAFYSGKKEKLKVAD---LIGRAVVVYKTDDN 275


>AT1G12520.3 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1);
           superoxide dismutase/ superoxide dismutase copper
           chaperone | chr1:4267277-4268206 REVERSE
          Length = 184

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 79  NVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNP-NNKTHG 137
           ++ GVV   Q       +    TGL+PG H + ++EYGD TNG  STG+ +NP  ++T  
Sbjct: 36  DIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT 95

Query: 138 APEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDD 190
            P       GDLG + A+ +G A  +    ++ ++    ++GRA+VV++ +D+
Sbjct: 96  EP------LGDLGTLEADKNGEAFYSGKKEKLKVAD---LIGRAVVVYKTDDN 139


>AT1G12520.2 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1);
           superoxide dismutase/ superoxide dismutase copper
           chaperone | chr1:4267277-4268438 REVERSE
          Length = 229

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 79  NVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNP-NNKTHG 137
           ++ GVV   Q       +    TGL+PG H + ++EYGD TNG  STG+ +NP  ++T  
Sbjct: 81  DIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT 140

Query: 138 APEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDD 190
            P       GDLG + A+ +G A  +    ++ ++    ++GRA+VV++ +D+
Sbjct: 141 EP------LGDLGTLEADKNGEAFYSGKKEKLKVAD---LIGRAVVVYKTDDN 184