Jatropha Genome Database

JcCB0247731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0247731.10 + phase: 0 /partial
         (187 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53580.1 | Symbols:  | diaminopimelate epimerase family prote...   330   4e-91

>AT3G53580.1 | Symbols:  | diaminopimelate epimerase family protein
           | chr3:19864784-19866907 FORWARD
          Length = 362

 Score =  330 bits (845), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 153/187 (81%), Positives = 169/187 (90%)

Query: 1   VDNRDSTEPRVTPEQAVKLCDRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGN 60
           VDNRDS+EP++T EQA KLCDRNFG+GADGVIFAMPG NGTDY+MRIFNSDGSEPEMCGN
Sbjct: 93  VDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGN 152

Query: 61  GVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLPA 120
           GVRCFARFIAELENLQGK SFTIHTGAGLIVPEIQ+DG+VKVDMG PILKA DVPT+L  
Sbjct: 153 GVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSG 212

Query: 121 NKDDAVVKSELNVDGETWNVTCVSMGNPHCVTFGTKENKDLLVDNLNLAEIGPKFEHHAV 180
           NK +AVV++EL VDG +WNVTCVSMGNPHC+TFG K   +L VD+LNL EIGPKFEHH +
Sbjct: 213 NKGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEM 272

Query: 181 FPARTNT 187
           FPARTNT
Sbjct: 273 FPARTNT 279