Jatropha Genome Database

JcCB0246261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0246261.10 - phase: 0 /pseudo/partial
         (69 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39930.1 | Symbols: ISA1, ATISA1 | ISA1 (ISOAMYLASE 1); alpha...   126   2e-30
AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3); alpha...    83   4e-17

>AT2G39930.1 | Symbols: ISA1, ATISA1 | ISA1 (ISOAMYLASE 1);
           alpha-amylase/ isoamylase | chr2:16666078-16672183
           FORWARD
          Length = 783

 Score =  126 bits (317), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 56/61 (91%)

Query: 1   LIAEAWDAGGLYQVGCFPHWQIWSEWNGKYRDIVRQFIKGTDGFSGAFAECLCGSPELIP 60
           LIAEAWDAGGLYQVG FPHW IWSEWNGK+RD+VRQFIKGTDGFSGAFAECLCGSP L  
Sbjct: 463 LIAEAWDAGGLYQVGMFPHWGIWSEWNGKFRDVVRQFIKGTDGFSGAFAECLCGSPNLYQ 522

Query: 61  G 61
           G
Sbjct: 523 G 523


>AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3);
           alpha-amylase/ isoamylase | chr4:5784099-5788839 FORWARD
          Length = 764

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 42/58 (72%)

Query: 1   LIAEAWDAGGLYQVGCFPHWQIWSEWNGKYRDIVRQFIKGTDGFSGAFAECLCGSPEL 58
           +IAE WD GGLY VG FP+W  W+EWNG YRD VR+FIKG  G  G+FA  + GS +L
Sbjct: 462 IIAEPWDCGGLYLVGKFPNWDRWAEWNGMYRDDVRRFIKGDSGMKGSFATRVSGSSDL 519