Jatropha Genome Database

JcCB0244361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0244361.20 - phase: 0 /pseudo/partial/short
         (50 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00900.1 | Symbols: RPS7.1, RPS7 | encodes a chloroplast ribo...    71   1e-13
ATCG01240.1 | Symbols: RPS7.2 | 30S chloroplast ribosomal protei...    71   1e-13

>ATCG00900.1 | Symbols: RPS7.1, RPS7 | encodes a chloroplast
          ribosomal protein S7, a constituent of the small
          subunit of the ribosomal complex | chrC:97478-97945
          REVERSE
          Length = 155

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/50 (74%), Positives = 41/50 (82%)

Query: 1  KKNCKIQ*IYCNRLVNTLINCILKHGQKSLAYQIIYRAMKKIQQKT*TNP 50
          +K  K   IY NRLVN L+N ILKHG+KSLAYQIIYRA+KKIQQKT TNP
Sbjct: 9  EKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNP 58


>ATCG01240.1 | Symbols: RPS7.2 | 30S chloroplast ribosomal protein
          S7 | chrC:140704-141171 FORWARD
          Length = 155

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/50 (74%), Positives = 41/50 (82%)

Query: 1  KKNCKIQ*IYCNRLVNTLINCILKHGQKSLAYQIIYRAMKKIQQKT*TNP 50
          +K  K   IY NRLVN L+N ILKHG+KSLAYQIIYRA+KKIQQKT TNP
Sbjct: 9  EKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNP 58