Jatropha Genome Database

JcCB0242921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242921.10 - phase: 1 /pseudo
         (185 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25990.1 | Symbols:  | DNA-binding protein GT-1-related | chr...   297   3e-81
AT1G13450.1 | Symbols:  | DNA binding protein GT-1 | chr1:461299...   294   2e-80
AT1G13450.2 | Symbols:  | DNA binding protein GT-1 | chr1:461299...   221   2e-58
AT1G13450.3 | Symbols:  | DNA binding protein GT-1 | chr1:461370...    85   2e-17

>AT3G25990.1 | Symbols:  | DNA-binding protein GT-1-related |
           chr3:9504846-9506703 REVERSE
          Length = 372

 Score =  297 bits (760), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 134/184 (72%), Positives = 161/184 (87%), Gaps = 1/184 (0%)

Query: 1   SGRPSLNLERRLDHDGHPLAITAPDAVAASGVPPWNWRETPGNGPENQSFGGRVITVKYL 60
           +GRP+LNLE  LDHDG PL I A D + A+GVPPWNWR+TPGNG + Q F GR+ITVK+ 
Sbjct: 189 NGRPTLNLETELDHDGLPLPIAA-DPITANGVPPWNWRDTPGNGVDGQPFAGRIITVKFG 247

Query: 61  DYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGL 120
           DYTRRVG+DGT +AIKEAI+SAFRLRT+RAFWLEDE+Q+IRSLDRDMP+GNY L +DEG+
Sbjct: 248 DYTRRVGIDGTAEAIKEAIRSAFRLRTRRAFWLEDEEQVIRSLDRDMPLGNYILRIDEGI 307

Query: 121 AVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREFDGYRNVDNMDDLRPGAL 180
           AV+VC YDESD +PVH EEK+FYTE+DYRDFL RRGWTCLREFD ++N+DNMD+L+ G L
Sbjct: 308 AVRVCHYDESDPLPVHQEEKIFYTEEDYRDFLARRGWTCLREFDAFQNIDNMDELQSGRL 367

Query: 181 YRGV 184
           YRG+
Sbjct: 368 YRGM 371


>AT1G13450.1 | Symbols:  | DNA binding protein GT-1 |
           chr1:4612999-4615115 REVERSE
          Length = 406

 Score =  294 bits (753), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 167/187 (89%), Gaps = 4/187 (2%)

Query: 1   SGRPSLNLERRLDHDGHPLAIT-APDAVAASGVPPWNWRETPGNGPEN--QSFGGRVITV 57
           +GRP+LNLERRLDHDGHPLAIT A DAVAA+GV PWNWRETPGNG ++  Q FGGRVITV
Sbjct: 220 NGRPALNLERRLDHDGHPLAITTAVDAVAANGVTPWNWRETPGNGDDSHGQPFGGRVITV 279

Query: 58  KYLDYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLD 117
           K+ DYTRR+GVDG+ +AIKE I+SAF LRT+RAFWLEDEDQIIR LDRDMP+GNY L LD
Sbjct: 280 KFGDYTRRIGVDGSAEAIKEVIRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLD 339

Query: 118 EGLAVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREFDGYRNVDNMDDLRP 177
           +GLA++VC YDES+ +PVH+EEK+FYTE+DYR+FL R+GW+ L + DG+RN++NMDDL+P
Sbjct: 340 DGLAIRVCHYDESNQLPVHSEEKIFYTEEDYREFLARQGWSSL-QVDGFRNIENMDDLQP 398

Query: 178 GALYRGV 184
           GA+YRGV
Sbjct: 399 GAVYRGV 405


>AT1G13450.2 | Symbols:  | DNA binding protein GT-1 |
           chr1:4612999-4615115 REVERSE
          Length = 361

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 125/143 (87%), Gaps = 1/143 (0%)

Query: 42  GNGPENQSFGGRVITVKYLDYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIR 101
           G+    Q FGGRVITVK+ DYTRR+GVDG+ +AIKE I+SAF LRT+RAFWLEDEDQIIR
Sbjct: 219 GDDSHGQPFGGRVITVKFGDYTRRIGVDGSAEAIKEVIRSAFGLRTRRAFWLEDEDQIIR 278

Query: 102 SLDRDMPVGNYTLHLDEGLAVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLR 161
            LDRDMP+GNY L LD+GLA++VC YDES+ +PVH+EEK+FYTE+DYR+FL R+GW+ L 
Sbjct: 279 CLDRDMPLGNYLLRLDDGLAIRVCHYDESNQLPVHSEEKIFYTEEDYREFLARQGWSSL- 337

Query: 162 EFDGYRNVDNMDDLRPGALYRGV 184
           + DG+RN++NMDDL+PGA+YRGV
Sbjct: 338 QVDGFRNIENMDDLQPGAVYRGV 360


>AT1G13450.3 | Symbols:  | DNA binding protein GT-1 |
           chr1:4613708-4615115 REVERSE
          Length = 278

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 44/49 (89%), Gaps = 1/49 (2%)

Query: 1   SGRPSLNLERRLDHDGHPLAIT-APDAVAASGVPPWNWRETPGNGPENQ 48
           +GRP+LNLERRLDHDGHPLAIT A DAVAA+GV PWNWRETPGNG  ++
Sbjct: 220 NGRPALNLERRLDHDGHPLAITTAVDAVAANGVTPWNWRETPGNGKSSE 268