Jatropha Genome Database

JcCB0242781.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.20 + phase: 0 /partial
         (170 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04180.1 | Symbols:  | AAA-type ATPase family protein | chr4:...   173   4e-44

>AT4G04180.1 | Symbols:  | AAA-type ATPase family protein |
           chr4:2020471-2023673 FORWARD
          Length = 609

 Score =  173 bits (439), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 125/182 (68%), Gaps = 18/182 (9%)

Query: 1   MLQVAYADSDQAASKPTLSP------------DSPSSYQDLEEIAKKERQRIEELLRSKG 48
           ++ VAYA+SD+A +  + +P            D P +Y D   IAKKER R+EEL++SKG
Sbjct: 82  VIGVAYAESDEANNDKSSAPIDPNDETSSAPIDPPPNYVD---IAKKERARVEELIQSKG 138

Query: 49  MKYGSYPRFTVALKGQKVTIKFQIPPACDVPQLIANLAMNLGLKVDERGGGSDMRLRAWD 108
            +YGSYPRF VA++GQK+T+KFQ+P  C+V QLI+N+   LG+KV +R GGSDM LRAWD
Sbjct: 139 TQYGSYPRFNVAVRGQKITLKFQVPSTCEVAQLISNIGSQLGVKVSDRTGGSDMLLRAWD 198

Query: 109 SAVAWQLTLSCPEKQKESHGDNSSFAEPEGDLCILLFRSLISRDKAEIEFIKSGRLSETE 168
           + VAWQ+TL   E +K+      S  + + DLCIL+F SL++ DK E+EFIK G L+  E
Sbjct: 199 NPVAWQITLRSVENKKKL---GESEDDSDDDLCILIFGSLLTSDKVEVEFIKKGSLTTEE 255

Query: 169 LD 170
           L+
Sbjct: 256 LE 257