Jatropha Genome Database

JcCB0242781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.10 + phase: 1 /partial
         (352 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22190.1 | Symbols:  | unknown protein | chr4:11742102-117432...   238   5e-63

>AT4G22190.1 | Symbols:  | unknown protein | chr4:11742102-11743265
           REVERSE
          Length = 387

 Score =  238 bits (607), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 157/355 (44%), Positives = 187/355 (52%), Gaps = 25/355 (7%)

Query: 8   SMDSPSRIVSQPPRLLLSPCSGGRR--SSDSNSPEFEFWMLQNPSFPEPN--LLSADELF 63
           +MDSP+ I S+P    LSPC   RR  S DSN PEFEFW L N SFP+ +  LLSADELF
Sbjct: 48  TMDSPTSIRSKPLPETLSPCGSQRRRSSCDSNPPEFEFWRLTNSSFPQADSDLLSADELF 107

Query: 64  VDGVXXXXXXXXXXXXXXXXXXXXXXXXXXDFEPQLELGPQISYET------IAAESAAP 117
            DGV                          D +P    G  I+ +       + +E    
Sbjct: 108 HDGVLLPLDLLSVKSELQSDPNIAEC----DPDPSPSTGSLITEQKSDLEPGLGSELTRE 163

Query: 118 LTASKRWKDIFKKSDKKTATAQNQXXXXXXXXXXXXXXSQSGATSGAELNINIWPFARSR 177
            T SKRW+DIF+KS+ K    + +                SG+ SGAELNINIWPF+RSR
Sbjct: 164 TTVSKRWRDIFRKSETKPPGKKEKVKENKKEKKKTGSGPSSGSGSGAELNINIWPFSRSR 223

Query: 178 SEGNSASRPRMFPGAPGARKVSSAPCSRSNSAGESKSRKWPTSPGRGGVHLGRSSPVWQV 237
           S GN+ +RPRM  GAP  RKVSSAPCSRSNS GESKSRKWP+SP R GVHLGR+SPVWQV
Sbjct: 224 SAGNNVTRPRMSFGAPTTRKVSSAPCSRSNSTGESKSRKWPSSPSRNGVHLGRNSPVWQV 283

Query: 238 RRGAAGGWSSKSVYSEPVSRNSEKGMSKKVTDRPRKTAAXXXXXXXXXKAKVVNLNVPTC 297
           RRG             PV +   + M + V  R               KAKV+NLNVP C
Sbjct: 284 RRGGGA----------PVGKTIPEPMGRVVGKREIPETRKGKTVIESNKAKVLNLNVPMC 333

Query: 298 IGYRQQLSCRSHESSGIRDCTXXXXXXXXXXXXXXXXXXXXHFFNLRSLFTKKVY 352
           IGYR +LSCR+ ESSG  + +                      F  R+LF KKVY
Sbjct: 334 IGYRSRLSCRTEESSGGGN-SNIGSDNNNNNNANANNPNPNGLFGFRNLFIKKVY 387