Jatropha Genome Database

JcCB0240711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0240711.10 + phase: 2 /partial
         (71 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13580.2 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE H...   130   2e-31
AT3G25540.1 | Symbols: LAG1 | LAG1 | chr3:9274752-9276261 FORWARD     110   2e-25
AT1G26200.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    93   3e-20
AT3G19260.1 | Symbols: LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMO...    69   7e-13

>AT1G13580.2 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE
           HOMOLOG 3) | chr1:4645006-4646765 REVERSE
          Length = 308

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 66/71 (92%)

Query: 1   YEVVQTLDKQRHRVEGPIYYYVFNTLLYCLLVLHIYWWVLIYRMLVKQIQARGQISEDVR 60
           YEVV  LDK +H +EGPIYYY+FNTLLYCLLVLHIYWWVL+YRMLVKQIQ RG++SEDVR
Sbjct: 238 YEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQDRGKLSEDVR 297

Query: 61  SDSEGEDEHED 71
           SDSEGEDEHED
Sbjct: 298 SDSEGEDEHED 308


>AT3G25540.1 | Symbols: LAG1 | LAG1 | chr3:9274752-9276261 FORWARD
          Length = 310

 Score =  110 bits (275), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/71 (71%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 1   YEVVQTLDKQRHRVEGPIYYYVFNTLLYCLLVLHIYWWVLIYRMLVKQIQARGQISEDVR 60
           Y+++ T+DK++H   GPI YY+FNTLLY LLVLHI+WWVLIYRMLVKQ+Q RG++SEDVR
Sbjct: 241 YQIIMTVDKEKHP-NGPILYYMFNTLLYFLLVLHIFWWVLIYRMLVKQVQDRGKLSEDVR 299

Query: 61  SDSEGEDEHED 71
           SDSE +DEHED
Sbjct: 300 SDSESDDEHED 310


>AT1G26200.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           integral to membrane; CONTAINS InterPro DOMAIN/s:
           Longevity assurance, LAG1/LAC1 (InterPro:IPR016439),
           TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST
           Arabidopsis thaliana protein match is: LAG13 (LAG1
           LONGEVITY ASSURANCE HOMOLOG 3) (TAIR:AT1G13580.2). |
           chr1:9063471-9064914 REVERSE
          Length = 312

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 57/68 (83%), Gaps = 4/68 (5%)

Query: 8   DKQRHRVEGP---IYYYVFNTLLYCLLVLHIYWWVLIYRMLVKQIQARGQISEDVRSDSE 64
           DK+     GP   ++YYVFNTLLYCL +LHIYWW+LIYR+L+ QI+A+G++++D+RSDSE
Sbjct: 245 DKKHLMETGPPLILFYYVFNTLLYCLQILHIYWWILIYRVLISQIRAKGKVAKDIRSDSE 304

Query: 65  GE-DEHED 71
           GE DEH+D
Sbjct: 305 GEDDEHQD 312


>AT3G19260.1 | Symbols: LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE
           HOMOLOGUE 2) | chr3:6669448-6671257 REVERSE
          Length = 296

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 15  EGPIYYYVFNTLLYCLLVLHIYWWVLIYRMLVKQIQARGQISEDVRSDSEGEDE 68
           EG + YY FNT+L  LLV HIYWW LI  M+V+ ++ RG++ ED+RSDSE +D+
Sbjct: 243 EGTLMYYSFNTMLLMLLVFHIYWWYLICAMIVRLLKNRGKVGEDIRSDSEDDDD 296