Jatropha Genome Database

JcCB0237541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0237541.20 + phase: 0 /pseudo/partial
         (56 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06210.1 | Symbols: ELF8, VIP6 | ELF8 (EARLY FLOWERING 8); bi...    80   3e-16

>AT2G06210.1 | Symbols: ELF8, VIP6 | ELF8 (EARLY FLOWERING 8);
          binding | chr2:2429108-2436588 REVERSE
          Length = 1091

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/38 (97%), Positives = 37/38 (97%)

Query: 1  NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
          NSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIA 47