Jatropha Genome Database

JcCB0236281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0236281.10 + phase: 1 /pseudo/partial
         (392 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65470.1 | Symbols: FAS1, NFB2 | FAS1 (FASCIATA 1); histone b...   134   1e-31

>AT1G65470.1 | Symbols: FAS1, NFB2 | FAS1 (FASCIATA 1); histone
           binding | chr1:24319906-24323879 REVERSE
          Length = 815

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/179 (45%), Positives = 107/179 (59%), Gaps = 4/179 (2%)

Query: 211 AKMKRQNAIKKQASIMERFLKRSKTDSPCQNEGTSIEETAPVLSGKKSEKMPEAVTMAMD 270
           A++K+Q  ++KQASIMERFLK+SK  S  Q +  S E TA  LS  K E     V  A+D
Sbjct: 324 AELKKQLQVQKQASIMERFLKKSKDSSLTQPKLPSSEVTAQELSCTKHENEIGKVVQAID 383

Query: 271 CTLSSNXXXXXXXXXKLHLSSWHHLGHAIRSNRKQHWSIRQKPKTELFKELKLTTARELS 330
              S+          + H +SW  LGH + S++K HW +R++PK+ELF +LKL+T   ++
Sbjct: 384 NAFSTTCEATVDDIRREHFASWRQLGHLLSSSKK-HWGMRRQPKSELFPKLKLSTNSGVT 442

Query: 331 HDGELIVEKLESEWGEQSSDDRLCATNLESSLNDKKWKRRKKLLQFDKSHRPAFYGIWP 389
            DGE  +EK      E + D R C     SS N KK +R K+LLQFDKS RP FYGIWP
Sbjct: 443 SDGEPNMEKQGDGCEENNFDGRQCKP---SSSNRKKSRRVKQLLQFDKSCRPGFYGIWP 498



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)

Query: 75  LSALQNSETYQSCRTDLMRASGKLAKALKEAEIRSLVDGTLQKNGTVKADQEAKLEQKVL 134
           L+ALQ  ET +  R+DL +A+ KL K L E +IRS +D  +QKN +  A++++K E+K+L
Sbjct: 189 LAALQREETEKLWRSDLSKAAEKLGKILSEVDIRSFMDNMMQKNSSEMAEKDSKREEKLL 248

Query: 135 IKQL 138
           +KQL
Sbjct: 249 LKQL 252