Jatropha Genome Database
- JcCB0235951.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0235951.10 - phase: 0 /partial
(186 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing... 108 2e-24
AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing... 108 2e-24
AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing... 105 2e-23
AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing... 105 2e-23
AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing... 105 2e-23
AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 102 2e-22
AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 99 1e-21
AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 99 1e-21
AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotei... 99 1e-21
AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 98 2e-21
AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 98 2e-21
AT1G58470.1 | Symbols: ATRBP1, RBP1 | ATRBP1 (ARABIDOPSIS THALIA... 97 5e-21
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 96 1e-20
AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing... 77 5e-15
AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing... 77 7e-15
AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing... 76 2e-14
AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing... 75 3e-14
AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-bindi... 65 2e-11
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 65 2e-11
AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL PROTEIN S19); RN... 64 6e-11
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH RNA-BI... 64 7e-11
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH RNA-BI... 64 7e-11
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 63 1e-10
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 63 1e-10
AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing... 61 3e-10
AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing... 61 3e-10
AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding / n... 60 7e-10
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 59 1e-09
AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 58 3e-09
AT3G56860.2 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2... 58 3e-09
AT3G56860.1 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2... 58 3e-09
AT3G56860.3 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2... 58 3e-09
AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 5e-09
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 57 5e-09
AT1G22330.1 | Symbols: | RNA binding / nucleic acid binding / n... 57 9e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 56 1e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RN... 56 1e-08
AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing... 55 2e-08
AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing... 55 2e-08
AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 3e-08
AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing... 54 4e-08
AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 4e-08
AT4G13850.3 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 54 5e-08
AT4G13850.2 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 54 5e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2 (GLYCINE-... 54 5e-08
AT4G13850.4 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 54 5e-08
AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleoti... 54 6e-08
AT2G22090.2 | Symbols: UBA1A | UBP1 interacting protein 1a (UBA1... 54 7e-08
AT2G22090.1 | Symbols: UBA1A | UBP1 interacting protein 1a (UBA1... 54 8e-08
AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 8e-08
AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding | chr3:1... 53 9e-08
AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 9e-08
AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing... 53 9e-08
AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing... 53 1e-07
AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein, puta... 53 1e-07
AT3G06970.1 | Symbols: | RNA binding / nucleic acid binding / n... 53 1e-07
AT4G36960.2 | Symbols: | RNA recognition motif (RRM)-containing... 52 1e-07
AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 1e-07
AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 2e-07
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 52 2e-07
AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 52 2e-07
AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 52 2e-07
AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 2e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 52 3e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 52 3e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 52 3e-07
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein, p... 52 3e-07
AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 3e-07
AT4G39260.4 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 51 3e-07
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 51 5e-07
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 50 6e-07
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 50 6e-07
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31 (31... 50 7e-07
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:1... 50 8e-07
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 50 1e-06
AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 1e-06
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 49 1e-06
AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 1e-06
AT1G17370.1 | Symbols: UBP1B | UBP1B (oligouridylate binding pro... 49 1e-06
AT1G17370.2 | Symbols: UBP1B | UBP1B (oligouridylate binding pro... 49 1e-06
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 49 2e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD, CIRCADIAN RHYT... 49 2e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD,... 49 2e-06
AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing... 49 2e-06
AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 2e-06
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDI... 49 3e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 3e-06
AT5G04600.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 3e-06
AT2G21690.1 | Symbols: | RNA-binding protein, putative | chr2:9... 48 3e-06
AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide bind... 48 4e-06
AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 4e-06
AT4G16280.2 | Symbols: FCA | FCA; RNA binding | chr4:9207164-921... 48 5e-06
AT4G16280.3 | Symbols: FCA | FCA; RNA binding | chr4:9208564-921... 47 6e-06
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 47 7e-06
AT2G18510.1 | Symbols: emb2444 | emb2444 (embryo defective 2444)... 47 8e-06
AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U) bindin... 47 8e-06
AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U) bindin... 47 8e-06
>AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445265-13447592 FORWARD
Length = 452
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 64/78 (82%)
Query: 28 RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDII 87
RTKKIFVGGLP +IT+ E KN+FD FGTI D VV+++ T +PRGFGFI+FDSEE+VD++
Sbjct: 117 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 176
Query: 88 LQERYRQFNGYVVEVKKA 105
L + + + NG +VEVK+A
Sbjct: 177 LHKTFHELNGKMVEVKRA 194
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E L+ +F +G + +AV++ ++ TG+ RGFGFI F + ++ +
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 72
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G VE KKA D
Sbjct: 73 KH-IIDGRTVEAKKAVPRD 90
>AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445552-13447592 FORWARD
Length = 455
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 64/78 (82%)
Query: 28 RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDII 87
RTKKIFVGGLP +IT+ E KN+FD FGTI D VV+++ T +PRGFGFI+FDSEE+VD++
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
Query: 88 LQERYRQFNGYVVEVKKA 105
L + + + NG +VEVK+A
Sbjct: 180 LHKTFHELNGKMVEVKRA 197
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E L+ +F +G + +AV++ ++ TG+ RGFGFI F + ++ +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G VE KKA D
Sbjct: 76 KH-IIDGRTVEAKKAVPRD 93
>AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502135-22503658 REVERSE
Length = 460
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 63/78 (80%)
Query: 28 RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDII 87
RTKKIFVGGLP +IT+EE KN+FD FGTI D VV+++ T +PRGFGFI+FDS++ VD +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 88 LQERYRQFNGYVVEVKKA 105
L + + + NG +VEVK+A
Sbjct: 168 LHKTFHELNGKLVEVKRA 185
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E L+++F ++G + +AV++ ++ TG+ RGFGFI F + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G VE KKA D
Sbjct: 67 KH-IIDGRTVEAKKAVPRD 84
>AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502135-22503658 REVERSE
Length = 460
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 63/78 (80%)
Query: 28 RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDII 87
RTKKIFVGGLP +IT+EE KN+FD FGTI D VV+++ T +PRGFGFI+FDS++ VD +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 88 LQERYRQFNGYVVEVKKA 105
L + + + NG +VEVK+A
Sbjct: 168 LHKTFHELNGKLVEVKRA 185
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E L+++F ++G + +AV++ ++ TG+ RGFGFI F + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G VE KKA D
Sbjct: 67 KH-IIDGRTVEAKKAVPRD 84
>AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502077-22503658 REVERSE
Length = 448
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 63/78 (80%)
Query: 28 RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDII 87
RTKKIFVGGLP +IT+EE KN+FD FGTI D VV+++ T +PRGFGFI+FDS++ VD +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 88 LQERYRQFNGYVVEVKKA 105
L + + + NG +VEVK+A
Sbjct: 168 LHKTFHELNGKLVEVKRA 185
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E L+++F ++G + +AV++ ++ TG+ RGFGFI F + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G VE KKA D
Sbjct: 67 KH-IIDGRTVEAKKAVPRD 84
>AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr2:14156085-14157435
FORWARD
Length = 404
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 6/115 (5%)
Query: 1 VDVKPAI------PKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFG 54
VDVK A+ P RS + + RTKKIFVGGLPP +T +E + +F+++G
Sbjct: 75 VDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYG 134
Query: 55 TITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTD 109
++DAV++ ++ T +PRGFGF+SFDSE++VD++L + + NG VEVK+A D
Sbjct: 135 PVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKD 189
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + + L+ +F +FG + V+ K TG+PRGFGF++F +D +LQ+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ + V+VK+A S +
Sbjct: 67 KH-HIDNRDVDVKRAMSRE 84
>AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492875-2495052
FORWARD
Length = 494
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 77/116 (66%), Gaps = 8/116 (6%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEF------RTKKIFVGGLPPNITKEELKNFFDSFG 54
V+ K A+P R Q N +S+S + RT+KIFVGGLP ++T+ + K +F+ FG
Sbjct: 75 VEAKKAVP--RDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFG 132
Query: 55 TITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTDM 110
T TD VV+++ T +PRGFGFI++DSEE V+ +L + + + NG +VEVK+A ++
Sbjct: 133 TTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKEL 188
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E LK +F SFG + +AV++ ++ TG+ RGFGF+ F +I++ E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G +VE KKA D
Sbjct: 67 KH-NIDGRLVEAKKAVPRD 84
>AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492875-2495102
FORWARD
Length = 495
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 77/116 (66%), Gaps = 8/116 (6%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEF------RTKKIFVGGLPPNITKEELKNFFDSFG 54
V+ K A+P R Q N +S+S + RT+KIFVGGLP ++T+ + K +F+ FG
Sbjct: 75 VEAKKAVP--RDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFG 132
Query: 55 TITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTDM 110
T TD VV+++ T +PRGFGFI++DSEE V+ +L + + + NG +VEVK+A ++
Sbjct: 133 TTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKEL 188
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GG+ + +E LK +F SFG + +AV++ ++ TG+ RGFGF+ F +I++ E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ +G +VE KKA D
Sbjct: 67 KH-NIDGRLVEAKKAVPRD 84
>AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19302548-19304106
REVERSE
Length = 371
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 12/117 (10%)
Query: 1 VDVKPAIPK-------RRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSF 53
V+ K A+P+ + + Q + SNS KKIFVGGL ++T+ E K +F F
Sbjct: 15 VEAKKAVPRDDHVVFNKSNSSLQGSPGPSNS-----KKIFVGGLASSVTEAEFKKYFAQF 69
Query: 54 GTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTDM 110
G ITD VV+++ T +PRGFGFIS+DSEE VD +LQ+ + + NG +VEVK A DM
Sbjct: 70 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDM 126
>AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19302548-19304278
REVERSE
Length = 431
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 12/117 (10%)
Query: 1 VDVKPAIPK-------RRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSF 53
V+ K A+P+ + + Q + SNS KKIFVGGL ++T+ E K +F F
Sbjct: 75 VEAKKAVPRDDHVVFNKSNSSLQGSPGPSNS-----KKIFVGGLASSVTEAEFKKYFAQF 129
Query: 54 GTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTDM 110
G ITD VV+++ T +PRGFGFIS+DSEE VD +LQ+ + + NG +VEVK A DM
Sbjct: 130 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDM 186
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 26 EFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
E + K+F+GG+ +++ L+++F SFG + +AV++ ++ TG+ RGFGF+ F +
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 86 IILQERYRQFNGYVVEVKKAKSTD 109
++ ++ +G +VE KKA D
Sbjct: 62 RVVLLKH-IIDGKIVEAKKAVPRD 84
>AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19302548-19304278
REVERSE
Length = 431
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 12/117 (10%)
Query: 1 VDVKPAIPK-------RRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSF 53
V+ K A+P+ + + Q + SNS KKIFVGGL ++T+ E K +F F
Sbjct: 75 VEAKKAVPRDDHVVFNKSNSSLQGSPGPSNS-----KKIFVGGLASSVTEAEFKKYFAQF 129
Query: 54 GTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKAKSTDM 110
G ITD VV+++ T +PRGFGFIS+DSEE VD +LQ+ + + NG +VEVK A DM
Sbjct: 130 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDM 186
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 26 EFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
E + K+F+GG+ +++ L+++F SFG + +AV++ ++ TG+ RGFGF+ F +
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 86 IILQERYRQFNGYVVEVKKAKSTD 109
++ ++ +G +VE KKA D
Sbjct: 62 RVVLLKH-IIDGKIVEAKKAVPRD 84
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | ATRBP1 (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 1); RNA binding / single-stranded
RNA binding | chr1:21727374-21728539 FORWARD
Length = 360
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 17/136 (12%)
Query: 1 VDVKPAIPKRR------------SKQEQDN----DEDSNSTEFRTKKIFVGGLPPNITKE 44
VDV+ AI K K +Q N + SN RTKKIFVGGL N T+E
Sbjct: 75 VDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEE 134
Query: 45 ELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKK 104
E K++F+ FG TD VV+H+ +T +PRGFGF+++DSE++V++++Q + + + VEVK+
Sbjct: 135 EFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKR 194
Query: 105 AKSTD-MMGKNDNYIN 119
A + + N N +N
Sbjct: 195 AIPKEGIQSNNGNAVN 210
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVGG+ ++E LK +F +G + +AVV K+TGKPRGFGF+ F ++ D++
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND--CDVVKAL 64
Query: 91 RYRQF-NGYVVEVKKA 105
R F G V+V+KA
Sbjct: 65 RDTHFILGKPVDVRKA 80
>AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr4:8231179-8232785
FORWARD
Length = 411
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 60/82 (73%)
Query: 28 RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDII 87
+TKKIFVGGLPP +T EE + +F+ +G +TD +++++ T +PRGFGF+SFDSE+ VD +
Sbjct: 108 KTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV 167
Query: 88 LQERYRQFNGYVVEVKKAKSTD 109
L + + +G VEVK+A D
Sbjct: 168 LHKTFHDLSGKQVEVKRALPKD 189
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVGG+ +++L+ F ++G ++ A+V+ +KLTG+PRGFGF+ F +D +LQE
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 91 RYRQFNGYVVEVKKAKSTD 109
++ + V+VK+A S +
Sbjct: 67 KH-SIDTREVDVKRAMSRE 84
>AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16225483-16227423 FORWARD
Length = 423
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Query: 23 NSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEE 82
+S +F+TKKIFVGG+P ++ +E K FF FG + + ++ + TG+ RGFGF++++SE+
Sbjct: 123 SSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
Query: 83 TVDIILQERYR-QFNGYVVEVKKAK 106
VD +L + R + +G VE+KKA+
Sbjct: 183 MVDHLLAKGNRIELSGTQVEIKKAE 207
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KIFVGGL T E F +G ITD+V++ ++ TG+PRGFGF+++ VD ++Q+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 91 RYRQFNGYVVEVKKAKSTDMMGKND 115
+ G VE+K+ M ND
Sbjct: 103 NH-IIIGKQVEIKRTIPRGSMSSND 126
>AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:6067394-6069098 REVERSE
Length = 369
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 68/107 (63%), Gaps = 8/107 (7%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
VD+K +P+ D D D + +T+KIFVGGLPP + ++ELKN+F +G I +
Sbjct: 135 VDLKRTLPR------GDKDTDIKAVS-KTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQ 187
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQE-RYRQFNGYVVEVKKAK 106
++++ TG+ RGFGF++F +E++VD + + + + VE+K+A+
Sbjct: 188 IMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAE 234
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVGG+ T E N+F FG + D+V++ +++TG PRGFGF++F + +L+E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 91 RY 92
+
Sbjct: 127 DH 128
>AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256621 FORWARD
Length = 358
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
V++K IPK + S + +TKKIFVGG+P +T++ELK+FF +G + +
Sbjct: 88 VEIKRTIPKGAGGNQ--------SKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQ 139
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQE-RYRQFNGYVVEVKKAK 106
VI + T + RGFGF+ FDSEE VD +L + VE+KKA+
Sbjct: 140 VIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAE 186
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KIF+GGL + T F +G ITD+V++ ++ TG+PRGFGFI+F VD ++++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 91 RYRQFNGYVVEVKK 104
+ NG VE+K+
Sbjct: 80 TH-VINGKQVEIKR 92
>AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256014 FORWARD
Length = 231
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
V++K IPK + S + +TKKIFVGG+P +T++ELK+FF +G + +
Sbjct: 88 VEIKRTIPKGAGGNQ--------SKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQ 139
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQE 90
VI + T + RGFGF+ FDSEE VD +L +
Sbjct: 140 VIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KIF+GGL + T F +G ITD+V++ ++ TG+PRGFGFI+F VD ++++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 91 RYRQFNGYVVEVKKA 105
+ NG VE+K+
Sbjct: 80 TH-VINGKQVEIKRT 93
>AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding
protein 6); RNA binding / nucleic acid binding /
nucleotide binding | chr1:6415226-6416283 FORWARD
Length = 155
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KIFVGGL P+ E LK F SFG I DAVV+ ++ +G RGFGF+++DS E + +Q
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 91 -RYRQFNGYVVEVKKAKS 107
+ ++ +G ++ V A S
Sbjct: 97 MQNKELDGRIIGVHPADS 114
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192461-1195413 FORWARD
Length = 310
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
+IFVGGL P +T +L+ F FG I D ++ + TG+ RGFGFI+F +D ++E
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 91 RY-RQFNGYVVEVKKAKSTDMMGKNDN 116
+ R F V+ V +A+ +G++D
Sbjct: 68 MHGRDFGDRVISVNRAEPK--LGRDDG 92
>AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL PROTEIN S19); RNA
binding | chr5:19203801-19204951 FORWARD
Length = 212
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S + + K+++GGL P + LK+ F SF +T+A V+ NK+TG+ RG+GF++F SE++
Sbjct: 25 SLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDS 84
Query: 84 VD-IILQERYRQFNGYVVEVKKAK 106
+ I ++ NG+ + V AK
Sbjct: 85 ANSAISAMNGQELNGFNISVNVAK 108
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606762-8607677 REVERSE
Length = 136
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S + + K+FVGGL LK F SFG +T+A VI ++ TG+ RGFGF+SF E++
Sbjct: 29 SLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDS 88
Query: 84 VDIILQER-YRQFNGYVVEVKKA 105
+ ++E ++ NG + V A
Sbjct: 89 ANNAIKEMDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606762-8607677 REVERSE
Length = 136
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S + + K+FVGGL LK F SFG +T+A VI ++ TG+ RGFGF+SF E++
Sbjct: 29 SLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDS 88
Query: 84 VDIILQER-YRQFNGYVVEVKKA 105
+ ++E ++ NG + V A
Sbjct: 89 ANNAIKEMDGKELNGRQIRVNLA 111
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22340089-22342148 FORWARD
Length = 292
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISF-DSEETVDIILQ 89
+IFVGGL ++T+ +L++ FD +G IT+ ++ + TG+PRGFGFI+F D D I
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 90 ERYRQFNGYVVEVKKAK 106
R+ V+ V KA+
Sbjct: 73 MHGRELGNKVISVNKAE 89
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22340089-22342148 FORWARD
Length = 292
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISF-DSEETVDIILQ 89
+IFVGGL ++T+ +L++ FD +G IT+ ++ + TG+PRGFGFI+F D D I
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 90 ERYRQFNGYVVEVKKAK 106
R+ V+ V KA+
Sbjct: 73 MHGRELGNKVISVNKAE 89
>AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052844-5054058 FORWARD
Length = 404
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 52/83 (62%)
Query: 25 TEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
++ +K+F+ GL + T E L++ F S+G + +A+VI +K+TGK +G+GF++F +
Sbjct: 70 SDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129
Query: 85 DIILQERYRQFNGYVVEVKKAKS 107
+ L+E ++ +G V + A S
Sbjct: 130 LLALKEPSKKIDGRVTVTQLAAS 152
>AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052844-5054058 FORWARD
Length = 404
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 52/83 (62%)
Query: 25 TEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
++ +K+F+ GL + T E L++ F S+G + +A+VI +K+TGK +G+GF++F +
Sbjct: 70 SDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129
Query: 85 DIILQERYRQFNGYVVEVKKAKS 107
+ L+E ++ +G V + A S
Sbjct: 130 LLALKEPSKKIDGRVTVTQLAAS 152
>AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr2:19229516-19231043 FORWARD
Length = 336
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 11 RSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKP 70
+ +Q Q ++N+T+ + KIFVGGL ++ ++ +F+ FG I +AVVI +K TG+
Sbjct: 3 QQRQFQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRS 62
Query: 71 RGFGFISFDSEETVDIILQ 89
+G+GF++F E Q
Sbjct: 63 KGYGFVTFKEAEAAMRACQ 81
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15634980-15636331 REVERSE
Length = 289
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVG LP N+ +L F+S G + VI++K+TG+ RGFGF++ S V+ Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ- 150
Query: 91 RYRQFNGY 98
QFNGY
Sbjct: 151 ---QFNGY 155
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 92
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV-DIILQ 89
+ FVGGL E+L+ F FG + D+ +I+++ +G+ RGFGF++F E+ + D I +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 90 ERYRQFNGYVVEVKKAKS 107
++ +G V+ V +A+S
Sbjct: 67 MNGKELDGRVITVNEAQS 84
>AT3G56860.2 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2a)
| chr3:21050708-21052144 REVERSE
Length = 478
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 20 EDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFD 79
+ SNS E KKI+V + + ++L FF FG I + + +K TG+P+GF +
Sbjct: 236 QHSNS-EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYK 294
Query: 80 SEETVDIILQERYRQFNGYVVEVKKAKSTDMMGKNDNYINN 120
S E+ L+E ++ F G+++ +KA GK + +N
Sbjct: 295 SSESAKRALEEPHKTFEGHILHCQKAIDGPKPGKQQQHHHN 335
>AT3G56860.1 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2a)
| chr3:21050708-21052144 REVERSE
Length = 478
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 20 EDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFD 79
+ SNS E KKI+V + + ++L FF FG I + + +K TG+P+GF +
Sbjct: 236 QHSNS-EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYK 294
Query: 80 SEETVDIILQERYRQFNGYVVEVKKAKSTDMMGKNDNYINN 120
S E+ L+E ++ F G+++ +KA GK + +N
Sbjct: 295 SSESAKRALEEPHKTFEGHILHCQKAIDGPKPGKQQQHHHN 335
>AT3G56860.3 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2a)
| chr3:21050708-21052144 REVERSE
Length = 478
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 20 EDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFD 79
+ SNS E KKI+V + + ++L FF FG I + + +K TG+P+GF +
Sbjct: 236 QHSNS-EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYK 294
Query: 80 SEETVDIILQERYRQFNGYVVEVKKAKSTDMMGKNDNYINN 120
S E+ L+E ++ F G+++ +KA GK + +N
Sbjct: 295 SSESAKRALEEPHKTFEGHILHCQKAIDGPKPGKQQQHHHN 335
>AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331739-7333749 FORWARD
Length = 374
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 12 SKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPR 71
S Q+ + +DS S +TKK+F+ GL +++ L+ F+ FG + + +I +K++ + +
Sbjct: 264 STQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSK 323
Query: 72 GFGFISFDSEETVDIILQERY-RQFNGYVVEVKKAKS 107
G+ F+ + +EE L+E + NG+++ V AK+
Sbjct: 324 GYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKT 360
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); ATP binding / RNA binding |
chr5:24560870-24562152 FORWARD
Length = 309
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 29 TKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIIL 88
+ K+F+GG+ ++ ++ L+ F +G + D VI ++ TG+ RGFGF++F S E +
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 89 QER-YRQFNGYVVEVKKA 105
Q R +G VV+V A
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT1G22330.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr1:7886693-7889241 FORWARD
Length = 291
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 22 SNSTEFRTK-------KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFG 74
SN++ +R+ K+FVGGL +E++ +FD FG I +AV+I +K TGK +G+G
Sbjct: 2 SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61
Query: 75 FISF-DSEETVDII 87
F++F DS+ +
Sbjct: 62 FVTFRDSDSATRAV 75
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 126
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV-DIILQ 89
+ FVGGL E+L+ F FG + D+ +I+++ +G+ RGFGF++F E+ + D I +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 90 ERYRQFNGYVVEVKKAK 106
++ +G V+ V +A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RNA
binding / nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 169
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV-DIILQ 89
+ FVGGL E+L+ F FG + D+ +I+++ +G+ RGFGF++F E+ + D I +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 90 ERYRQFNGYVVEVKKAK 106
++ +G V+ V +A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107949 FORWARD
Length = 347
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEE-----TVD 85
K+FVGGL KE +K F+ FG I +AVVI +K +G+ +G+GF++F E VD
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 86 I--ILQERYRQFNGYVVEVKKAKSTDMMGKNDNYINNM 121
++ R N + ++++K + INNM
Sbjct: 74 ATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNM 111
>AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107618 FORWARD
Length = 242
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEE-----TVD 85
K+FVGGL KE +K F+ FG I +AVVI +K +G+ +G+GF++F E VD
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 86 I--ILQERYRQFNGYVVEVKKAKSTDMMGKNDNYINNM 121
++ R N + ++++K + INNM
Sbjct: 74 ATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNM 111
>AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107659 FORWARD
Length = 249
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEE-----TVD 85
K+FVGGL KE +K F+ FG I +AVVI +K +G+ +G+GF++F E VD
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 86 I--ILQERYRQFNGYVVEVKKAKSTDMMGKNDNYINNM 121
++ R N + ++++K + INNM
Sbjct: 74 ATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNM 111
>AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17127138-17128493 FORWARD
Length = 451
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+KI+V + +I ++L FF FG I + + +K TG+P+GF + S E+ L+
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 90 ERYRQFNGYVVEVKKA 105
E ++ F G+V+ KA
Sbjct: 287 EPHKTFEGHVLHCHKA 302
>AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17127138-17128493 FORWARD
Length = 451
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+KI+V + +I ++L FF FG I + + +K TG+P+GF + S E+ L+
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 90 ERYRQFNGYVVEVKKA 105
E ++ F G+V+ KA
Sbjct: 287 EPHKTFEGHVLHCHKA 302
>AT4G13850.3 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 144
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S + K+F+GGL L++ F FG + DA VI ++ TG+ RGFGF++F+ E
Sbjct: 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGA 88
Query: 84 VDIILQER-YRQFNGYVVEVKKA 105
+ E ++ NG + V A
Sbjct: 89 ATAAISEMDGKELNGRHIRVNPA 111
>AT4G13850.2 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 153
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S + K+F+GGL L++ F FG + DA VI ++ TG+ RGFGF++F+ E
Sbjct: 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGA 88
Query: 84 VDIILQER-YRQFNGYVVEVKKA 105
+ E ++ NG + V A
Sbjct: 89 ATAAISEMDGKELNGRHIRVNPA 111
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2
(GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA
binding / double-stranded DNA binding / single-stranded
DNA binding | chr4:8021314-8022065 FORWARD
Length = 158
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S + K+F+GGL L++ F FG + DA VI ++ TG+ RGFGF++F+ E
Sbjct: 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGA 88
Query: 84 VDIILQER-YRQFNGYVVEVKKA 105
+ E ++ NG + V A
Sbjct: 89 ATAAISEMDGKELNGRHIRVNPA 111
>AT4G13850.4 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 129
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S + K+F+GGL L++ F FG + DA VI ++ TG+ RGFGF++F+ E
Sbjct: 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGA 88
Query: 84 VDIILQER-YRQFNGYVVEVKKA 105
+ E ++ NG + V A
Sbjct: 89 ATAAISEMDGKELNGRHIRVNPA 111
>AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleotide
binding | chr3:9671953-9673055 FORWARD
Length = 245
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD-IILQ 89
+ F+GGL + L++ F+ +G + +A V+ +K +G+ RGFGFI+FD ++ +D I
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 90 ERYRQFNGYVVEVKKAK 106
+G + V KA+
Sbjct: 68 MNGMDLDGRTITVDKAQ 84
>AT2G22090.2 | Symbols: UBA1A | UBP1 interacting protein 1a (UBA1a)
| chr2:9389407-9390450 REVERSE
Length = 347
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+KIFV GLP T+E L F+ +G I + V+ +K TGK +GFGF+ F + + L+
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
Query: 90 E 90
E
Sbjct: 164 E 164
>AT2G22090.1 | Symbols: UBA1A | UBP1 interacting protein 1a (UBA1a)
| chr2:9388571-9390450 REVERSE
Length = 343
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+KIFV GLP T+E L F+ +G I + V+ +K TGK +GFGF+ F + + L+
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
Query: 90 E 90
E
Sbjct: 164 E 164
>AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29447317-29450181 FORWARD
Length = 287
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
K+FVGGL +E++ +F+ FG I +AV+I +K TGK +G+GF++F ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
>AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 329
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDS-EETVDIILQ 89
+++VG LP IT EL F GT+ D ++++K+T + RGFGF++ S EE + +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 90 ERYRQFNGYVVEV 102
Q G V+V
Sbjct: 177 FNSSQIGGRTVKV 189
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K++ G L N+T + LK+ F + A VI+ + TG+ RGFGFISF+S E V Q
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENV----QS 275
Query: 91 RYRQFNGYVVEVKKAK 106
NG VE + +
Sbjct: 276 ALATMNGVEVEGRALR 291
>AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144632-12146040 FORWARD
Length = 245
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
K+FVGGL K L+N+F+ FG I +AVVI +K +G+ +G+GF++F E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144632-12146040 FORWARD
Length = 244
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD 85
K+FVGGL K L+N+F+ FG I +AVVI +K +G+ +G+GF++F E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29447317-29449246 FORWARD
Length = 271
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
K+FVGGL +E++ +F+ FG I +AV+I +K TGK +G+GF++F ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
>AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022601-8023162 FORWARD
Length = 87
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
+++VG L P T + L+ F +G + DA+V+ ++ T + RGFGF+++ S + +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 91 R-YRQFNGYVVEVK 103
++ NG V VK
Sbjct: 64 MDGKELNGRRVSVK 77
>AT3G06970.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr3:2199653-2201150 REVERSE
Length = 317
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 22 SNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISF 78
+N+ + R KIFVG L T ++L+ +F+ FG + DA V+ G+ +G+GFI+F
Sbjct: 4 TNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>AT4G36960.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427349-17429589 FORWARD
Length = 379
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+K+ V G+P +I + LK++ FG + D +V+ ++ TG+ RGFG+++F S E L+
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 90 ERYRQFNGYVVEVKKAKSTDMM 111
+ N ++EVK A + M
Sbjct: 63 GEHFLGN-RILEVKVATPKEEM 83
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
++VK A PK +Q + +IFV +P ++++ + ++ F+ +G ITD
Sbjct: 72 LEVKVATPKEEMRQPAK----------KVTRIFVARIPSSVSESDFRSHFERYGEITDLY 121
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKA 105
+ + + + RG GFI+F S ++V+ ++++ + G V V +A
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTH-DLGGTTVAVDRA 165
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KIFVG LP + ++L+++F FG I DA + + RGFGF++F D + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR- 299
Query: 91 RYRQFNGYVVEVKKAKSTDMMG 112
R + G V + A D G
Sbjct: 300 RSHEICGQEVAIDSATPLDEAG 321
>AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427349-17429589 FORWARD
Length = 379
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+K+ V G+P +I + LK++ FG + D +V+ ++ TG+ RGFG+++F S E L+
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 90 ERYRQFNGYVVEVKKAKSTDMM 111
+ N ++EVK A + M
Sbjct: 63 GEHFLGN-RILEVKVATPKEEM 83
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 1 VDVKPAIPKRRSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAV 60
++VK A PK +Q + +IFV +P ++++ + ++ F+ +G ITD
Sbjct: 72 LEVKVATPKEEMRQPAK----------KVTRIFVARIPSSVSESDFRSHFERYGEITDLY 121
Query: 61 VIHNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVKKA 105
+ + + + RG GFI+F S ++V+ ++++ + G V V +A
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTH-DLGGTTVAVDRA 165
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KIFVG LP + ++L+++F FG I DA + + RGFGF++F D + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR- 299
Query: 91 RYRQFNGYVVEVKKAKSTDMMG 112
R + G V + A D G
Sbjct: 300 RSHEICGQEVAIDSATPLDEAG 321
>AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:7262879-7264834 REVERSE
Length = 274
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
K+FVGGL E L+ FD +G I +AVVI +K TG+ +G+GF++F E
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD
Length = 952
Score = 52.4 bits (124), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 14/105 (13%)
Query: 2 DVKPAIPKRRSKQEQDNDEDSNSTEFRTK-KIFVGGLPPNITKEELKNFFDSFGTITDAV 60
D KP + R+ Q+ EFR + KIFVG LP I K E + FF FG I + +
Sbjct: 146 DTKPPEEETRNPQQ----------EFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVI 195
Query: 61 VI--HNKLTGKPRGFGFISFDSEETVDIILQERYRQFNGYVVEVK 103
+I H+++ K GFGFI + +E++ ++ +F+G ++ VK
Sbjct: 196 LIKGHHEVE-KNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878497-1879515 FORWARD
Length = 146
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+F+GGL T++ L F G + +A ++ ++++ + +GFGF++F S + L E
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 91 -RYRQFNGYVVEVKKAKSTDMMGKNDNY 117
+Q NG + V AK+ +G Y
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLGGGGGY 122
>AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 293
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K++VG LP + L+N F FGTI V+H++ TG+ R F F+SF S E D L
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSF 272
Query: 91 RYRQFNGYVVEVKK 104
Q+ G + V++
Sbjct: 273 NGTQYEGRRIIVRE 286
>AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 294
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K++VG LP + L+N F FGTI V+H++ TG+ R F F+SF S E D L
Sbjct: 214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSF 273
Query: 91 RYRQFNGYVVEVKK 104
Q+ G + V++
Sbjct: 274 NGTQYEGRRIIVRE 287
>AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21798382-21799109 FORWARD
Length = 169
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
KI+VGGLP KE L NFF FG I V+ ++ T + +G+GF++F E+ ++
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 91 RYRQFNGYVVEVKKAKSTDMMGKNDNYINNMGFXXXXXXXXXXXWDTYNALPYFYPGGST 150
G + K A + N + +N+ LP + P +
Sbjct: 74 PNPTIEGRITNCKLAFVGAKVKPNQSQPSNLP----------------QLLPRYDPQYNP 117
Query: 151 PFAGWVFPQNYLEGGDNTSAPSNQVQSLIS 180
+ + QN + N S Q+Q+L++
Sbjct: 118 RYDPMSYQQNRMANNTNNGIGSIQLQTLLT 147
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S E+ +++G LPP + + L N F SFG I A VI +++TG +G+GF+ + +
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 84 VDIILQER--YRQFNGYVVEVKKA 105
+ +Q YR F G + V+ A
Sbjct: 534 ANTAVQAMNGYR-FEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S E+ +++G LPP + + L N F SFG I A VI +++TG +G+GF+ + +
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 84 VDIILQER--YRQFNGYVVEVKKA 105
+ +Q YR F G + V+ A
Sbjct: 534 ANTAVQAMNGYR-FEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S E+ +++G LPP + + L N F SFG I A VI +++TG +G+GF+ + +
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 84 VDIILQER--YRQFNGYVVEVKKA 105
+ +Q YR F G + V+ A
Sbjct: 534 ANTAVQAMNGYR-FEGRTLAVRIA 556
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 426
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
IFVG L P +T L + F +F + +DA V+ ++ TG+ RGFGF+SF +++ + E
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
>AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28686932-28688506 REVERSE
Length = 285
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
K+FVGGL E L+ F+ +G I +AVVI +K TG+ +G+GF++F E
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding
/ nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 105
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
+ FVGGL E+L+ F FG + D+ +I+++ +G+ RGFGF++F E+ + ++E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); ATP binding / RNA binding |
chr1:27915346-27916857 FORWARD
Length = 289
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 29 TKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIIL 88
+ KIFVGG+ + + L+ F +G + DA +I ++ TG+ RGF F++F S E +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 89 QERYRQFNGYVVEVKKA 105
Q + +G + V A
Sbjct: 93 QLDGQDLHGRRIRVNYA 109
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16912511-16913250 REVERSE
Length = 102
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 29 TKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIIL 88
+ ++FV L T + L+ F FG I +A +I + T +P+GFGFI+FDSE+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA---- 61
Query: 89 QERYRQFNGYV-------VEVKKAKSTDMMGKNDNYINNMG 122
++ + +G + VEV K G N N + G
Sbjct: 62 RKALKSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKAEDRG 102
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673027-4675950 FORWARD
Length = 427
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
IFVG L P +T L F F + +DA V+ ++ TG+ RGFGF+SF +++ + E
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
binding | chr4:12766223-12767952 REVERSE
Length = 329
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVG L ++ + L F+ GT+ A VI+N+ T + RGFGF++ S + + +++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 91 --RYRQFNGYVVEVKKA 105
RY NG ++ V KA
Sbjct: 211 FNRY-DLNGRLLTVNKA 226
>AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15743112-15744504 REVERSE
Length = 142
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
++FV GL T E+L++ F SFG + DA VI ++ +G+ +GFGF+++ + E + E
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 91 RYRQF-NGYVVEV 102
+F +G+V+ V
Sbjct: 95 MNAKFLDGWVIFV 107
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20452677-20453965 REVERSE
Length = 289
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIIL 88
+I+VG LP ++ L+ F G + DA V+ ++ TG+ RGFGF+ +E V++ +
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVG LP ++ + L F+ GT+ + VI+N+ T + RGFGF++ + E + + E
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV-E 172
Query: 91 RYRQF--NGYVVEVKKA 105
++ F NG + V +A
Sbjct: 173 KFNSFEVNGRRLTVNRA 189
>AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20273863-20275827 REVERSE
Length = 261
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 28 RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDII 87
+ K+FVGGL + KE + + F +G I +AV+I +KLT + +G+GF++F +
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
Query: 88 LQERYRQFNG 97
++ NG
Sbjct: 75 CEDSTPIING 84
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding / translation initiation factor |
chr1:8055599-8058799 FORWARD
Length = 660
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 13 KQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRG 72
+QE+ DE++ + F ++V LP I ++EL+ F FG I+ AVV+ ++ +G R
Sbjct: 214 RQERARDENTPTPRF--TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRC 270
Query: 73 FGFISFDSEE 82
FGF++F+ E
Sbjct: 271 FGFVNFECTE 280
>AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27643801-27645386 REVERSE
Length = 181
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K++V GL T++ L++ F+ FG + ++ +K+ +P+GF F+ +++EE +Q
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 91 RYRQF-NGYVVEVKKAKSTDMMGK 113
+ +F +G V+ V++AK+ M +
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSR 161
>AT1G17370.1 | Symbols: UBP1B | UBP1B (oligouridylate binding
protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825
REVERSE
Length = 419
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
IFVG L P +T L F + T +DA V+ ++ TG+ RGFGF+SF +++ + E
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
>AT1G17370.2 | Symbols: UBP1B | UBP1B (oligouridylate binding
protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825
REVERSE
Length = 416
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
IFVG L P +T L F + T +DA V+ ++ TG+ RGFGF+SF +++ + E
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555034-2555829 REVERSE
Length = 143
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSE 81
K+F+GGL ++ ++ LK+ F SFG + + + ++K +G+ RGFGF+ F E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD, CIRCADIAN RHYTHM,
AND RNA BINDING 2); RNA binding / double-stranded DNA
binding / single-stranded DNA binding |
chr2:9265477-9266316 REVERSE
Length = 159
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 22 SNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSE 81
S E+R FVGGL L+ F +G + D+ +I+++ TG+ RGFGF++F E
Sbjct: 3 SGDVEYRC---FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
Query: 82 ETV-DIILQERYRQFNGYVVEVKKAK 106
+ + D I + +G + V +A+
Sbjct: 60 KAMKDAIEGMNGQDLDGRSITVNEAQ 85
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding /
double-stranded DNA binding / single-stranded DNA
binding | chr2:9265477-9266316 REVERSE
Length = 176
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 22 SNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSE 81
S E+R FVGGL L+ F +G + D+ +I+++ TG+ RGFGF++F E
Sbjct: 3 SGDVEYRC---FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
Query: 82 ETV-DIILQERYRQFNGYVVEVKKAK 106
+ + D I + +G + V +A+
Sbjct: 60 KAMKDAIEGMNGQDLDGRSITVNEAQ 85
>AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 253
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD-IILQ 89
K++VG L +TKE L+N F G + A V T K GFGF++F SEE V+ I+
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 90 ERYRQFNGYVVEVKKA 105
G + V KA
Sbjct: 238 LNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 253
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVD-IILQ 89
K++VG L +TKE L+N F G + A V T K GFGF++F SEE V+ I+
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 90 ERYRQFNGYVVEVKKA 105
G + V KA
Sbjct: 238 LNNSLLEGQKIRVNKA 253
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING
2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 629
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 11 RSKQEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKP 70
R + EQ+ E ++ +F++ ++V L P+I+ E+LK F FGT+T + V+ + G
Sbjct: 301 RVRYEQNLKEAAD--KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTS 357
Query: 71 RGFGFISFDSEETVDIILQERYRQFNGYVVEVK 103
+G GF++F + E E Q +G ++E K
Sbjct: 358 KGSGFVAFATPEEAT----EAMSQLSGKMIESK 386
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 14 QEQDNDEDSNSTEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGF 73
+ Q+ D +N T+F ++V L + T ++LKN F +G IT AVV+ + GK +GF
Sbjct: 201 RRQERDSTANKTKF--TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGF 257
Query: 74 GFISFDSEE 82
GF++F++ +
Sbjct: 258 GFVNFENAD 266
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE
Length = 352
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQER 91
++VGG+P ++T+ +L F +G I D +I +K TGK +GF F++++ + + + +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVD-- 95
Query: 92 YRQFNGYVV 100
NG +V
Sbjct: 96 --NLNGALV 102
>AT5G04600.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:1323700-1325486 FORWARD
Length = 222
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDI 86
+++G +P + E++ FF FGT+ V NK TGK + FGFI F+ E +I
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEI 116
>AT2G21690.1 | Symbols: | RNA-binding protein, putative |
chr2:9270114-9270597 REVERSE
Length = 117
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 33 FVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETV 84
FV GL + +++L + F FG + D+ +I+++ TGK R FGF++F+ E+++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSM 61
>AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:3640349-3640876 REVERSE
Length = 175
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 28 RTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
R KI+VGGLP E L+++F+ FG I ++ ++ TG+ G+GF++F E+
Sbjct: 50 RYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAES 105
>AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9392397-9393545 REVERSE
Length = 382
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 30 KKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQ 89
+ IFV GL + T E LK F+ +G IT+ V+ +K TG+ +GFGF+ F + + L+
Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
Query: 90 ERYRQFNGYVVEVKKAK 106
++ V A+
Sbjct: 223 NPEKRMYNRTVSCLPAR 239
>AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207164-9214412 REVERSE
Length = 747
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 29 TKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIIL 88
T K+FVG +P T+EE++ +F+ G + + +I +K TG+ +G F+ + + + D +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 89 QERYRQF 95
+ + Q
Sbjct: 179 RALHNQI 185
>AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
chr4:9208564-9214412 REVERSE
Length = 533
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 29 TKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIIL 88
T K+FVG +P T+EE++ +F+ G + + +I +K TG+ +G F+ + + + D +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 89 QERYRQF 95
+ + Q
Sbjct: 179 RALHNQI 185
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:26999606-27001850 FORWARD
Length = 461
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 24 STEFRTKKIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEET 83
S+ + + +FVG +P + T+E+L+ G + ++ ++ TGKP+G+GF + EET
Sbjct: 3 SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Query: 84 V 84
Sbjct: 63 A 63
>AT2G18510.1 | Symbols: emb2444 | emb2444 (embryo defective 2444);
RNA binding / nucleic acid binding / nucleotide binding
| chr2:8031554-8033517 REVERSE
Length = 363
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 32 IFVGGLPPNITKEELKNFFDSFGTI-TDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
+F+G L P++ ++ L + F +FG I ++ ++ + TG RGFGFIS+DS E D ++
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 91 RYRQF 95
Q+
Sbjct: 174 MTGQY 178
>AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U) binding |
chr3:19819738-19821423 REVERSE
Length = 342
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVG L N+ +L F+S G + VI++K+TG+ RGFGF++ + V +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEV----EA 155
Query: 91 RYRQFNGYVVE 101
+QFNGY E
Sbjct: 156 AAQQFNGYEFE 166
>AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U) binding |
chr3:19819738-19821423 REVERSE
Length = 342
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 31 KIFVGGLPPNITKEELKNFFDSFGTITDAVVIHNKLTGKPRGFGFISFDSEETVDIILQE 90
K+FVG L N+ +L F+S G + VI++K+TG+ RGFGF++ + V +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEV----EA 155
Query: 91 RYRQFNGYVVE 101
+QFNGY E
Sbjct: 156 AAQQFNGYEFE 166