Jatropha Genome Database

JcCB0235721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0235721.10 - phase: 0 /partial
         (530 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72390.1 | Symbols:  | unknown protein | chr1:27245455-272512...   104   1e-22

>AT1G72390.1 | Symbols:  | unknown protein | chr1:27245455-27251218
           FORWARD
          Length = 1325

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 102/196 (52%), Gaps = 13/196 (6%)

Query: 1   HFADLLAAQFCSLMIREGYLVEDNIQPKPTQMNIAS-TSQP-IAVGIPPNNSAAEVQKYN 58
           H ADLLA QF SLM REGY++E++I  KP + +    +S P  A G P   SA ++Q+Y 
Sbjct: 790 HIADLLATQFKSLMAREGYMIEEHIMAKPNRGDTGPISSHPNSAGGYPRGYSANDMQQYG 849

Query: 59  EAVSAQAPNDI-KPSLSGNASINPSQNLLANARMLPPGNPKALPMSQGLVSAVSMAARXX 117
           +AV+ QA  +  K   +GN   N +QN+LANARM+PP N +AL MSQGL+S VSM  +  
Sbjct: 850 DAVAGQASGEASKHGNTGNTPNNSTQNILANARMVPPTNSQALQMSQGLLSGVSMPMQ-- 907

Query: 118 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAMMLPSNSLSHLNALG 177
                                                     R +M+LP+N LS +N++ 
Sbjct: 908 --------PQQLDPQQSALLSSHSQQKNQQSMFTQQQHPQMQRPSMILPTNPLSAINSMS 959

Query: 178 QNSNMQLGNHMVNKPS 193
           Q+S MQ G  M NK S
Sbjct: 960 QSSGMQPGGQMANKYS 975



 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 13/113 (11%)

Query: 267  NVGQNSMNLGQASSITNVISQQIRAGQMSQAQAAFLTSKLRM----RPSILGPSQSGIAG 322
            N+GQN MNL  AS++ N ISQQ+R+G ++  Q A  T ++RM    R  ++G  Q+GI+G
Sbjct: 1054 NMGQNPMNLNPASNL-NAISQQLRSGALTPQQNALFT-QIRMGMANRGGVMGAPQTGISG 1111

Query: 323  MSGARQIQPGSASLSMLGQSLNRANMNPMQR-SAIGPMGPPKLMAG-VNLYVN 373
            +SG RQ+ P SA LSML Q  NRAN   +QR +A+G MGPPKLM G +NLY+N
Sbjct: 1112 VSGTRQMHPSSAGLSMLDQ--NRAN---LQRAAAMGNMGPPKLMPGMMNLYMN 1159



 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 428  SSSLQAVVSPPQVGSPS---TMVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGAIH 484
            +S LQ+V+SPPQVGSPS   T                                +SSGA+H
Sbjct: 1220 ASPLQSVLSPPQVGSPSAGITQQQLQQSSPQQMSQRTPMSPQQVNQRTPMSPQISSGAMH 1279

Query: 485  AMSAGNPEACPASPQLSSQTLGSVGSITNSPMELQGVNKSNSVSN 529
             MS  N E CPASPQLSSQT+GSVGSITNSPMELQG  K+NS  N
Sbjct: 1280 PMSTSNLEGCPASPQLSSQTMGSVGSITNSPMELQGP-KNNSAGN 1323