Jatropha Genome Database
- JcCB0235321.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0235321.10 - phase: 0
(220 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35190.1 | Symbols: | unknown protein | chr4:16746724-167480... 352 1e-97
AT2G28305.1 | Symbols: | unknown protein | chr2:12081186-120843... 332 2e-91
AT2G37210.1 | Symbols: | Encodes a protein of unknown function.... 327 3e-90
AT3G53450.1 | Symbols: | unknown protein | chr3:19812977-198154... 321 2e-88
AT5G06300.1 | Symbols: | carboxy-lyase | chr5:1922042-1925278 R... 320 4e-88
AT2G35990.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 296 7e-81
AT5G11950.2 | Symbols: | protein homodimerization | chr5:385507... 277 4e-75
AT5G11950.1 | Symbols: | protein homodimerization | chr5:385507... 277 4e-75
AT5G03270.1 | Symbols: | unknown protein | chr5:781870-783997 F... 255 1e-68
AT2G35990.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 223 5e-59
AT2G35990.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 223 5e-59
AT5G26140.1 | Symbols: | lysine decarboxylase family protein | ... 150 6e-37
>AT4G35190.1 | Symbols: | unknown protein | chr4:16746724-16748090
FORWARD
Length = 228
Score = 352 bits (903), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 166/201 (82%), Positives = 182/201 (90%)
Query: 7 VVKSRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMGLVSQEVHR 66
+VKSRFKRVCVFCGSS+GK++CY DAA +L +ELV+RRL+LVYGGGS GLMGLVSQ VH
Sbjct: 3 IVKSRFKRVCVFCGSSSGKRECYSDAATDLAQELVTRRLNLVYGGGSIGLMGLVSQAVHE 62
Query: 67 GGGHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELL 126
GGHVLGIIP+TLM KEITGET GEV VADMH+RKAEMARHSDCFIALPGGYGTLEELL
Sbjct: 63 AGGHVLGIIPRTLMDKEITGETYGEVIAVADMHERKAEMARHSDCFIALPGGYGTLEELL 122
Query: 127 EVITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNAKELVQK 186
EVI WAQLGIHDKPVGLLNVDGYYN LLTFIDKAVDDGFI PSQR I VSAPNAKELVQK
Sbjct: 123 EVIAWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRHIFVSAPNAKELVQK 182
Query: 187 LEDYVPLHDGVVAKAKWEAEQ 207
LE Y P++DGV+AK++WE E+
Sbjct: 183 LEAYKPVNDGVIAKSRWEVEK 203
>AT2G28305.1 | Symbols: | unknown protein | chr2:12081186-12084307
FORWARD
Length = 213
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/209 (74%), Positives = 181/209 (86%)
Query: 8 VKSRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMGLVSQEVHRG 67
++S+FKR+CVFCGSS G K Y+DAA+ELG ELVSR +DLVYGGGS GLMGL+SQ V G
Sbjct: 3 IESKFKRICVFCGSSAGNKVSYKDAAIELGTELVSRNIDLVYGGGSIGLMGLISQAVFNG 62
Query: 68 GGHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLE 127
G HV+G+IPKTLM +EITGETVGEV+ VADMHQRKAEMA+HSD FIALPGGYGTLEELLE
Sbjct: 63 GRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 122
Query: 128 VITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKL 187
VITWAQLGIHDKPVGLLNV+GYYN LL+FIDKAV++GFI P+ R IIVSAP+AKELV+KL
Sbjct: 123 VITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVSAPSAKELVKKL 182
Query: 188 EDYVPLHDGVVAKAKWEAEQVELNARLQI 216
EDYVP H+ V +K WE EQ+ L+ +I
Sbjct: 183 EDYVPRHEKVASKKSWEMEQIGLSPTCEI 211
>AT2G37210.1 | Symbols: | Encodes a protein of unknown function.
It has been crystallized and shown to be structurally
almost identical to the protein encoded by At5g11950. |
chr2:15624253-15626834 REVERSE
Length = 215
Score = 327 bits (839), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 155/200 (77%), Positives = 175/200 (87%)
Query: 9 KSRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMGLVSQEVHRGG 68
KS+F+R+CVFCGSS GKK Y+DAA++LG ELVSR +DLVYGGGS GLMGLVSQ VH GG
Sbjct: 10 KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGG 69
Query: 69 GHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 128
HV+GIIPKTLM +E+TGETVGEVR VADMHQRKAEMA+HSD FIALPGGYGTLEELLEV
Sbjct: 70 RHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEV 129
Query: 129 ITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLE 188
ITWAQLGIHDKPVGLLNVDGYYN LL+FIDKAV++GFI P+ R IIVSAP AKELV+KLE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLE 189
Query: 189 DYVPLHDGVVAKAKWEAEQV 208
+Y P H+ V K WE E++
Sbjct: 190 EYAPCHERVATKLCWEMERI 209
>AT3G53450.1 | Symbols: | unknown protein | chr3:19812977-19815430
REVERSE
Length = 215
Score = 321 bits (823), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 152/204 (74%), Positives = 175/204 (85%)
Query: 9 KSRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMGLVSQEVHRGG 68
KS+F R+CVFCGSS GKK Y+DAA++LG ELV R +DLVYGGGS GLMGLVSQ VH GG
Sbjct: 10 KSKFGRICVFCGSSQGKKSSYQDAAVDLGNELVLRNIDLVYGGGSIGLMGLVSQAVHDGG 69
Query: 69 GHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 128
HV+G+IPKTLM +E+TGETVGEVR VADMHQRKAEMARHSD FIALPGGYGTLEELLEV
Sbjct: 70 RHVIGVIPKTLMPRELTGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEV 129
Query: 129 ITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLE 188
ITWAQLGIHDKPVGLLNVDGYYN LL+FIDKAV++GFI + R II+SAP AKELV+KLE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISTNARQIIISAPTAKELVKKLE 189
Query: 189 DYVPLHDGVVAKAKWEAEQVELNA 212
+Y P H+ V K WE E+++ ++
Sbjct: 190 EYSPCHESVATKLCWEIERIDYSS 213
>AT5G06300.1 | Symbols: | carboxy-lyase | chr5:1922042-1925278
REVERSE
Length = 217
Score = 320 bits (820), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 155/204 (75%), Positives = 174/204 (85%), Gaps = 4/204 (1%)
Query: 1 MEEKRGVVKSRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMGLV 60
MEE KSRFKR+CVFCGSS+GKK Y++AA++LG ELV RR+DLVYGGGS GLMGLV
Sbjct: 1 MEE----TKSRFKRICVFCGSSSGKKPSYQEAAIQLGNELVERRIDLVYGGGSVGLMGLV 56
Query: 61 SQEVHRGGGHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYG 120
SQ VH GG HVLG+IPKTLM +EITGET+GEV+ VADMHQRKAEMAR +D FIALPGGYG
Sbjct: 57 SQAVHHGGRHVLGVIPKTLMPREITGETIGEVKAVADMHQRKAEMARQADAFIALPGGYG 116
Query: 121 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNA 180
TLEELLEVITWAQLGIH KPVGLLNVDGYYN LLTFIDKAVD+GFI P R IIVSAPNA
Sbjct: 117 TLEELLEVITWAQLGIHRKPVGLLNVDGYYNSLLTFIDKAVDEGFISPMARRIIVSAPNA 176
Query: 181 KELVQKLEDYVPLHDGVVAKAKWE 204
KELV++LE+Y P D + +K W+
Sbjct: 177 KELVRQLEEYEPEFDEITSKLVWD 200
>AT2G35990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has
3002 Blast hits to 3001 proteins in 744 species: Archae
- 8; Bacteria - 1757; Metazoa - 10; Fungi - 79; Plants -
185; Viruses - 0; Other Eukaryotes - 963 (source: NCBI
BLink). | chr2:15114070-15116647 FORWARD
Length = 213
Score = 296 bits (758), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 141/204 (69%), Positives = 165/204 (80%), Gaps = 4/204 (1%)
Query: 1 MEEKRGVVKSRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMGLV 60
MEE KSRF+R+CVFCGSS+G K Y DAAL+L +LV R +DLVYGGGS GLMGL+
Sbjct: 1 MEE----TKSRFRRICVFCGSSSGNKTTYHDAALQLAHQLVERNIDLVYGGGSVGLMGLI 56
Query: 61 SQEVHRGGGHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYG 120
SQ VH GG HVLGIIPK+L +EITGE++GEV V+ MHQRKAEM R +D FIALPGGYG
Sbjct: 57 SQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALPGGYG 116
Query: 121 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNA 180
T EELLEVITW+QLGIH KPVGLLNVDG+Y+ LLTFIDKAVD+GF+ + R IIVSAPNA
Sbjct: 117 TFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVSAPNA 176
Query: 181 KELVQKLEDYVPLHDGVVAKAKWE 204
+L+Q LE+YVP HD V+K W+
Sbjct: 177 PQLLQLLEEYVPKHDDFVSKMVWD 200
>AT5G11950.2 | Symbols: | protein homodimerization |
chr5:3855072-3856815 FORWARD
Length = 216
Score = 277 bits (708), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 162/200 (81%)
Query: 9 KSRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMGLVSQEVHRGG 68
+SRF+++CVFCGS +G ++ + DAA+ELG ELV R++DLVYGGGS GLMGL+S+ V+ GG
Sbjct: 6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGG 65
Query: 69 GHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 128
HVLGIIPK LM EI+GETVG+VR VADMH+RKA MA+ ++ FIALPGGYGT+EELLE+
Sbjct: 66 LHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEM 125
Query: 129 ITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLE 188
ITW+QLGIH K VGLLNVDGYYN LL D V++GFI P R+I+VSAP AKEL++K+E
Sbjct: 126 ITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 185
Query: 189 DYVPLHDGVVAKAKWEAEQV 208
+Y P H V + W+ E++
Sbjct: 186 EYTPSHMHVASHESWKVEEL 205
>AT5G11950.1 | Symbols: | protein homodimerization |
chr5:3855072-3856815 FORWARD
Length = 216
Score = 277 bits (708), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 162/200 (81%)
Query: 9 KSRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMGLVSQEVHRGG 68
+SRF+++CVFCGS +G ++ + DAA+ELG ELV R++DLVYGGGS GLMGL+S+ V+ GG
Sbjct: 6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGG 65
Query: 69 GHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 128
HVLGIIPK LM EI+GETVG+VR VADMH+RKA MA+ ++ FIALPGGYGT+EELLE+
Sbjct: 66 LHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEM 125
Query: 129 ITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLE 188
ITW+QLGIH K VGLLNVDGYYN LL D V++GFI P R+I+VSAP AKEL++K+E
Sbjct: 126 ITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 185
Query: 189 DYVPLHDGVVAKAKWEAEQV 208
+Y P H V + W+ E++
Sbjct: 186 EYTPSHMHVASHESWKVEEL 205
>AT5G03270.1 | Symbols: | unknown protein | chr5:781870-783997
FORWARD
Length = 229
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 133/204 (65%), Positives = 153/204 (75%), Gaps = 20/204 (9%)
Query: 2 EEKRGVVK---SRFKRVCVFCGSSTGKKDCYRDAALELGKELVSRRLDLVYGGGSAGLMG 58
E KR + K SRFK +CVFCGSS G K Y+DAA++L KELV R++DLVYGGGS GLMG
Sbjct: 5 EGKREMTKKQSSRFKSICVFCGSSNGNKASYQDAAIDLAKELVMRKIDLVYGGGSIGLMG 64
Query: 59 LVSQEVHRGGG--------------HVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAE 104
LVSQ VH GG H + + + ++TGETVGEV+ VADMHQRKA
Sbjct: 65 LVSQAVHDGGRHNNNNNGNDDALFCHSVNV---SQTNSKLTGETVGEVKEVADMHQRKAV 121
Query: 105 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDG 164
MA+HSD FI LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY+ LL FIDKAV++G
Sbjct: 122 MAKHSDAFITLPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYDALLLFIDKAVEEG 181
Query: 165 FIMPSQRSIIVSAPNAKELVQKLE 188
FI+P+ R IIVSAP A+EL KLE
Sbjct: 182 FILPTARHIIVSAPTARELFIKLE 205
>AT2G35990.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1). |
chr2:15114733-15116647 FORWARD
Length = 161
Score = 223 bits (569), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 105/148 (70%), Positives = 123/148 (83%)
Query: 57 MGLVSQEVHRGGGHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALP 116
MGL+SQ VH GG HVLGIIPK+L +EITGE++GEV V+ MHQRKAEM R +D FIALP
Sbjct: 1 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 60
Query: 117 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVS 176
GGYGT EELLEVITW+QLGIH KPVGLLNVDG+Y+ LLTFIDKAVD+GF+ + R IIVS
Sbjct: 61 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 120
Query: 177 APNAKELVQKLEDYVPLHDGVVAKAKWE 204
APNA +L+Q LE+YVP HD V+K W+
Sbjct: 121 APNAPQLLQLLEEYVPKHDDFVSKMVWD 148
>AT2G35990.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has
2269 Blast hits to 2268 proteins in 637 species: Archae
- 6; Bacteria - 1228; Metazoa - 8; Fungi - 85; Plants -
183; Viruses - 0; Other Eukaryotes - 759 (source: NCBI
BLink). | chr2:15114733-15116647 FORWARD
Length = 161
Score = 223 bits (569), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 105/148 (70%), Positives = 123/148 (83%)
Query: 57 MGLVSQEVHRGGGHVLGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALP 116
MGL+SQ VH GG HVLGIIPK+L +EITGE++GEV V+ MHQRKAEM R +D FIALP
Sbjct: 1 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 60
Query: 117 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVS 176
GGYGT EELLEVITW+QLGIH KPVGLLNVDG+Y+ LLTFIDKAVD+GF+ + R IIVS
Sbjct: 61 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 120
Query: 177 APNAKELVQKLEDYVPLHDGVVAKAKWE 204
APNA +L+Q LE+YVP HD V+K W+
Sbjct: 121 APNAPQLLQLLEEYVPKHDDFVSKMVWD 148
>AT5G26140.1 | Symbols: | lysine decarboxylase family protein |
chr5:9130796-9131636 FORWARD
Length = 143
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/126 (58%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
Query: 82 KEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGG-YGTLEELLEVITWAQLGIHDKP 140
+ I+GETVGEVR V+DMH+RKA MA+ + FIAL G Y T+EELLE+ITWAQLGIH K
Sbjct: 4 EHISGETVGEVRIVSDMHERKATMAQEAGAFIALLGERYETMEELLEMITWAQLGIHKKT 63
Query: 141 VGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLEDYVPLHDGVVAK 200
VGLLNVDGYYN LL F D V++GFI +I+VSAP+A+EL++K+E Y P H + +
Sbjct: 64 VGLLNVDGYYNNLLAFFDTGVEEGFIKQGACNIVVSAPSARELMEKMELYTPSHKYIASH 123
Query: 201 AKWEAE 206
W+ E
Sbjct: 124 QSWKVE 129